Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F001708105.1_202016-08-12] 11 sequences; 9,597,535 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq4 100 3e-16 >seq4 Length=1577441 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 142973 AAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCT 143032 |||||||| |||| || ||||| ||||| ||||| || || | || || |||| Sbjct 1239722 AAAACTAAGTGAAGAGTGGATTCCTTTTGAATGTTATAGTCAGAAAGAGTTCTGCCGTCT 1239781 Query 143033 TCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCG 143092 || | ||| ||||| ||| |||| | |||||||||||| ||||| || ||||| ||||| Sbjct 1239782 TCCAATTGCTTACCTGCAAAGATTAAACGTTGCTGATCAGGAGGAATACCTTCCTTGTCC 1239841 Query 143093 GTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTC 143152 ||| || || | | || | ||||| | | || || || | || | ||| Sbjct 1239842 TGAATCTTAGACTTGACGTTGTCAATGGTGTCTGATGACTCCACCTCGAGGGTAATAGTC 1239901 Query 143153 TTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||||||| || || || ||||| ||||||||| Sbjct 1239902 TTGCCGGTTAAGGTCTTGACGAAGATTTGCATA 1239934 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| ||| | || || || |||| || ||||| ||||| ||||| || || Sbjct 1239935 CCACCTCTTAATCTCAGGACCAAGTGAAGAGTGGATTCCTTTTGAATGTTATAGTCAGAA 1239994 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || |||||| | ||| ||||| ||| |||| | |||||||||||| ||||| Sbjct 1239995 AGAGTTCTGCCGTCTTCCAATTGCTTACCTGCAAAGATTAAACGTTGCTGATCAGGAGGA 1240054 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| ||| || || | | || | ||||| | | || || Sbjct 1240055 ATACCTTCCTTGTCCTGAATCTTAGACTTGACGTTGTCAATGGTGTCTGATGACTCCACC 1240114 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | ||||||||||| || || || ||||| ||||||||| Sbjct 1240115 TCGAGGGTAATAGTCTTGCCGGTTAAGGTCTTGACGAAGATTTGCATA 1240162 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| ||| | || || || |||| || ||||| ||||| ||||| || || Sbjct 1240163 CCACCTCTTAATCTCAGGACCAAGTGAAGAGTGGATTCCTTTTGAATGTTATAGTCAGAA 1240222 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || |||||| | ||| ||||| ||| |||| | |||||||||||| ||||| Sbjct 1240223 AGAGTTCTGCCGTCTTCCAATTGCTTACCTGCAAAGATTAAACGTTGCTGATCAGGAGGA 1240282 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| ||| || || | | || | ||||| | | || || Sbjct 1240283 ATACCTTCCTTGTCCTGAATCTTAGACTTGACGTTGTCAATGGTGTCTGATGACTCCACC 1240342 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | ||||||||||| || || || ||||| ||||||||| Sbjct 1240343 TCGAGGGTAATAGTCTTGCCGGTTAAGGTCTTGACGAAGATTTGCATA 1240390 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| ||| | || || || |||| || ||||| ||||| ||||| || || Sbjct 1240391 CCACCTCTTAATCTCAGGACCAAGTGAAGAGTGGATTCCTTTTGAATGTTATAGTCAGAA 1240450 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || |||||| | ||| ||||| ||| |||| | |||||||||||| ||||| Sbjct 1240451 AGAGTTCTGCCGTCTTCCAATTGCTTACCTGCAAAGATTAAACGTTGCTGATCAGGAGGA 1240510 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| ||| || || | | || | ||||| | | || || Sbjct 1240511 ATACCTTCCTTGTCCTGAATCTTAGACTTGACGTTGTCAATGGTGTCTGATGACTCCACC 1240570 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| ||| | ||||| || || | ||||| || || || ||||| Sbjct 1240571 TCAAGAGTGATAGTCTTACCTGTTAGGGTTTTCACAAAAATCTGCAT 1240617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507014330285520