Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F001708105.1_202016-08-12] 11 sequences; 9,597,535 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq2 185 1e-41 seq3 93.3 6e-14 >seq2 Length=2687137 Score = 185 bits (204), Expect = 1e-41 Identities = 562/856 (66%), Gaps = 27/856 (3%) Strand=Plus/Minus Query 125010 TATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAG 125069 ||||| ||||| ||| ||||||||||| |||| | || ||||||||||| | ||| || Sbjct 443572 TATCACGACATCTGGCAAATGTACAAACAGGCCGAAGCTTCCTTTTGGACTGCCGAGGAA 443513 Query 125070 GTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAG 125129 | || || ||||| || | || ||| | | |||| ||| || | |||| | Sbjct 443512 ATAGACTTGGGAAAGGATTTGCATGACTGGAATAATCGTATGAACGACAATGAGAAGTAT 443453 Query 125130 TTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTG 125189 ||||| || || | ||||| ||||| | ||| ||||| || ||||| || ||| || Sbjct 443452 TTTATCTCTAGAGTTCTTGCCTTTTTTGCTGCCTCTGATGGTATTGTCAATGAAAATTTG 443393 Query 125190 TTGACACGATTCTCTCAAGAG-TTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCA 125248 || | ||| ||| || | | |||| || | || |||||||| || || Sbjct 443392 GTGGAAAACTTCAGCGCTGAGGTTCAAC-TTCCCGAAGCAAAATGTTTTTACGGTTTTCA 443334 Query 125249 AATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCG 125308 ||||||||| |||||| | ||||| |||| ||||| ||||||| | ||||| Sbjct 443333 AATCATGATGGAGAACATCCACTCCGAAACTTACTCATTGTTGATTGATACTTACATCAA 443274 Query 125309 CGATCCGCAACGTAAACACATGCTCTTT-AACGCAATCGACACGGTGCCGTCTATACGTA 125367 ||||| || | | | || || || || || ||||| || | || | ||| Sbjct 443273 AGATCCAAAA-GAATCCGAATTCTTGTTCAATGCCATCGAGACCATTCCATGTATCAAAG 443215 Query 125368 AAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGAC 125427 |||||||| | |||| || | ||||| | || ||| | ||| || ||| || | Sbjct 443214 AAAAGGCTGACTGGGCCATGAGATGGATTGCCGATGACGATGCTTTGTTCGCTGAACGTT 443155 Query 125428 TGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTT 125487 |||| || ||||| || || || || |||||||||||||| ||| || | ||||| | Sbjct 443154 TGGTTGCCTTCGCTGCTGTTGAAGGTATCTTCTTTTCGGGCTCTTTCGCTTCTATCTTCT 443095 Query 125488 GGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAG 125547 || | || ||| | || || ||||| || |||| | || ||| |||| | ||| Sbjct 443094 GGTTGAAAAAGAGAGGTCTTATGCCAGGTTTGACCTTCTCCAATGAGCTTATTTGCAGAG 443035 Query 125548 ACGAGGGCCTACACTGTGACTTTGC---CATTCTACTGTTTCGCAACTATCTGCGTCCCG 125604 | || || ||||| |||||||| | | ||| | | || ||| || Sbjct 443034 ATGAAGGATTACACACCGACTTTGCTTGCTTGCTATTCTCTC---ACT---TG------A 442987 Query 125605 AGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAAC 125664 | |||| |||| || |||| || || ||| | || || || || ||| ||| Sbjct 442986 ACAACAGAGCCAGTGAGGAAATCGTTGAAAAGATTATTACAGAGGCTGTCGAGATTGAA- 442928 Query 125665 AAGAGTTTC-TAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATG 125723 || || | | | || || | || || || | || | || |||||||||| | ||| Sbjct 442927 AAAAGATACTTCACAGATGCTCTTCCTGTTTCCTTGCTGGGAATGAACTGCAGCTTGATG 442868 Query 125724 TGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCGCAAGA-- 125781 ||| |||| | ||||| || || ||| | |||||| || | | ||| ||| | Sbjct 442867 TGCCAGTATGTTGAGTTCGTTGCTGATAGACTACTG--GTAGCT-CTGGGCAACAAAAAA 442811 Query 125782 -TTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACC 125840 | ||||||| || ||||| |||||||||||| | ||| || | | ||||||||| Sbjct 442810 GTGTACAACGTCACCAATCCATTTGATTTCATGGAGAACATTTCTTTGGCTGGTAAGACC 442751 Query 125841 AACTTTTTCGAGAAGA 125856 ||||| ||||| |||| Sbjct 442750 AACTTCTTCGAAAAGA 442735 >seq3 Length=1828518 Score = 93.3 bits (102), Expect = 6e-14 Identities = 158/224 (71%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126 |||||| ||||||||||||||||||| || ||| | || | || | ||||| |||| Sbjct 322390 GGCGATTTGGGGCCAGTGTACGGATTTCAATGGCGCCATTTTGGAGCTCAGTATAAAGAC 322449 Query 70127 TGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAA-TTGCAGACAATCATTGACACTCT 70185 || |||||||||| | || || || |||| ||| |||| | | ||||| || || Sbjct 322450 TGTAAGACAGACTACACTGGCCAAGGGTTTGACCAACTTGC-TAGGGTAATTGAAACACT 322508 Query 70186 CAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCA 70245 ||||||||| || || || || | ||| | ||||||| || | ||||| | Sbjct 322509 TCGTACCAATCCATATGACAGAAGAATAATTATGAGTGCATGGAACCCGCCTGATTTTGA 322568 Query 70246 CCAAATGGCACTACCACCGTGTCACTGT-TTGGCTCAGTTTTAC 70288 ||||||| || ||||| ||||| ||| || ||| |||||| Sbjct 322569 GAAAATGGCTCTCCCACCCTGTCA-TGTATTTTGTCACTTTTAC 322611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741059098104360