Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F001708105.1_202016-08-12]
11 sequences; 9,597,535 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq2 185 1e-41
seq3 93.3 6e-14
>seq2
Length=2687137
Score = 185 bits (204), Expect = 1e-41
Identities = 562/856 (66%), Gaps = 27/856 (3%)
Strand=Plus/Minus
Query 125010 TATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAG 125069
||||| ||||| ||| ||||||||||| |||| | || ||||||||||| | ||| ||
Sbjct 443572 TATCACGACATCTGGCAAATGTACAAACAGGCCGAAGCTTCCTTTTGGACTGCCGAGGAA 443513
Query 125070 GTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAG 125129
| || || ||||| || | || ||| | | |||| ||| || | |||| |
Sbjct 443512 ATAGACTTGGGAAAGGATTTGCATGACTGGAATAATCGTATGAACGACAATGAGAAGTAT 443453
Query 125130 TTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTG 125189
||||| || || | ||||| ||||| | ||| ||||| || ||||| || ||| ||
Sbjct 443452 TTTATCTCTAGAGTTCTTGCCTTTTTTGCTGCCTCTGATGGTATTGTCAATGAAAATTTG 443393
Query 125190 TTGACACGATTCTCTCAAGAG-TTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCA 125248
|| | ||| ||| || | | |||| || | || |||||||| || ||
Sbjct 443392 GTGGAAAACTTCAGCGCTGAGGTTCAAC-TTCCCGAAGCAAAATGTTTTTACGGTTTTCA 443334
Query 125249 AATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCG 125308
||||||||| |||||| | ||||| |||| ||||| ||||||| | |||||
Sbjct 443333 AATCATGATGGAGAACATCCACTCCGAAACTTACTCATTGTTGATTGATACTTACATCAA 443274
Query 125309 CGATCCGCAACGTAAACACATGCTCTTT-AACGCAATCGACACGGTGCCGTCTATACGTA 125367
||||| || | | | || || || || || ||||| || | || | |||
Sbjct 443273 AGATCCAAAA-GAATCCGAATTCTTGTTCAATGCCATCGAGACCATTCCATGTATCAAAG 443215
Query 125368 AAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGAC 125427
|||||||| | |||| || | ||||| | || ||| | ||| || ||| || |
Sbjct 443214 AAAAGGCTGACTGGGCCATGAGATGGATTGCCGATGACGATGCTTTGTTCGCTGAACGTT 443155
Query 125428 TGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTT 125487
|||| || ||||| || || || || |||||||||||||| ||| || | ||||| |
Sbjct 443154 TGGTTGCCTTCGCTGCTGTTGAAGGTATCTTCTTTTCGGGCTCTTTCGCTTCTATCTTCT 443095
Query 125488 GGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAG 125547
|| | || ||| | || || ||||| || |||| | || ||| |||| | |||
Sbjct 443094 GGTTGAAAAAGAGAGGTCTTATGCCAGGTTTGACCTTCTCCAATGAGCTTATTTGCAGAG 443035
Query 125548 ACGAGGGCCTACACTGTGACTTTGC---CATTCTACTGTTTCGCAACTATCTGCGTCCCG 125604
| || || ||||| |||||||| | | ||| | | || ||| ||
Sbjct 443034 ATGAAGGATTACACACCGACTTTGCTTGCTTGCTATTCTCTC---ACT---TG------A 442987
Query 125605 AGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAAC 125664
| |||| |||| || |||| || || ||| | || || || || ||| |||
Sbjct 442986 ACAACAGAGCCAGTGAGGAAATCGTTGAAAAGATTATTACAGAGGCTGTCGAGATTGAA- 442928
Query 125665 AAGAGTTTC-TAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATG 125723
|| || | | | || || | || || || | || | || |||||||||| | |||
Sbjct 442927 AAAAGATACTTCACAGATGCTCTTCCTGTTTCCTTGCTGGGAATGAACTGCAGCTTGATG 442868
Query 125724 TGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCGCAAGA-- 125781
||| |||| | ||||| || || ||| | |||||| || | | ||| ||| |
Sbjct 442867 TGCCAGTATGTTGAGTTCGTTGCTGATAGACTACTG--GTAGCT-CTGGGCAACAAAAAA 442811
Query 125782 -TTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACC 125840
| ||||||| || ||||| |||||||||||| | ||| || | | |||||||||
Sbjct 442810 GTGTACAACGTCACCAATCCATTTGATTTCATGGAGAACATTTCTTTGGCTGGTAAGACC 442751
Query 125841 AACTTTTTCGAGAAGA 125856
||||| ||||| ||||
Sbjct 442750 AACTTCTTCGAAAAGA 442735
>seq3
Length=1828518
Score = 93.3 bits (102), Expect = 6e-14
Identities = 158/224 (71%), Gaps = 4/224 (2%)
Strand=Plus/Plus
Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126
|||||| ||||||||||||||||||| || ||| | || | || | ||||| ||||
Sbjct 322390 GGCGATTTGGGGCCAGTGTACGGATTTCAATGGCGCCATTTTGGAGCTCAGTATAAAGAC 322449
Query 70127 TGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAA-TTGCAGACAATCATTGACACTCT 70185
|| |||||||||| | || || || |||| ||| |||| | | ||||| || ||
Sbjct 322450 TGTAAGACAGACTACACTGGCCAAGGGTTTGACCAACTTGC-TAGGGTAATTGAAACACT 322508
Query 70186 CAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCA 70245
||||||||| || || || || | ||| | ||||||| || | ||||| |
Sbjct 322509 TCGTACCAATCCATATGACAGAAGAATAATTATGAGTGCATGGAACCCGCCTGATTTTGA 322568
Query 70246 CCAAATGGCACTACCACCGTGTCACTGT-TTGGCTCAGTTTTAC 70288
||||||| || ||||| ||||| ||| || ||| ||||||
Sbjct 322569 GAAAATGGCTCTCCCACCCTGTCA-TGTATTTTGTCACTTTTAC 322611
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741059098104360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |