Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F001708105.1_202016-08-12] 11 sequences; 9,597,535 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq2 140 2e-28 seq3 118 8e-22 seq4 114 9e-21 >seq2 Length=2687137 Score = 140 bits (154), Expect = 2e-28 Identities = 170/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||||||| | ||| | || | || || || || || |||||||| ||| Sbjct 1169894 CCACCTCTCAATCTCAGAACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCGGAC 1169953 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| |||| ||||||| ||||| || ||||| | ||||||||||||||||| ||| Sbjct 1169954 AGAGTTCTACCGTCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGTTGGTCAGGAGGA 1170013 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| ||||| ||| ||| ||| || | || ||||| ||| || || Sbjct 1170014 ATTCCTTCCTTGTCTTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAGGACTCGACT 1170073 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTG 15368 || ||||||||||| ||||| || | || || || ||||| ||||| |||| Sbjct 1170074 TCCAAGGTAATGGTCTTACCGGTTAAGGTCTTGACGAAAATCTGCATTTTTG 1170125 >seq3 Length=1828518 Score = 118 bits (130), Expect = 8e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||||||| | || || || | ||| || || ||||| |||||||| || Sbjct 868962 CCACCTCTCAATCTAAGGACCAAGTGCAAGGTAGACTCCTTTTGGATGTTGTAGTCAGAC 868903 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | |||| | || || ||||| || ||||| | |||| ||| |||||||| ||| Sbjct 868902 AAAGTTCTACCATCCTCCAATTGCTTACCAGCAAAGATCAGACGCTGTTGGTCAGGAGGA 868843 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 ||||| || ||||| ||| ||| ||| || | || || || ||| | || || Sbjct 868842 ATTCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTGTCGGAAGACTCCACC 868783 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || ||||| || || ||||| || || || ||||| ||||||||||| || Sbjct 868782 TCCAAGGTGATAGTCTTACCGGTAAGGGTCTTTACGAAAATTTGCATTTT 868733 >seq4 Length=1577441 Score = 114 bits (126), Expect = 9e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| ||||||||||||||||| ||||| ||||| || ||||| ||||| || || Sbjct 1239707 CCACCCCTCAATCTTAAAACTAAGTGAAGAGTGGATTCCTTTTGAATGTTATAGTCAGAA 1239766 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| |||| ||||||| ||||| || || || | || |||||||| || || ||| Sbjct 1239767 AGAGTTCTGCCGTCTTCCAATTGCTTACCTGCAAAGATTAAACGTTGCTGATCAGGAGGA 1239826 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| ||||| ||| || ||| || | || ||||| || || || Sbjct 1239827 ATACCTTCCTTGTCCTGAATCTTAGACTTGACGTTGTCAATGGTGTCTGATGACTCCACC 1239886 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | |||||| || || || || | || || || || ||||||||| Sbjct 1239887 TCGAGGGTAATAGTCTTGCCGGTTAAGGTCTTGACGAAGATTTGCATA 1239934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362179151445351