Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F001708105.1_202016-08-12] 11 sequences; 9,597,535 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq3 95.1 8e-15 seq2 84.2 1e-11 seq4 82.4 5e-11 >seq3 Length=1828518 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 33141 CACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAG 33200 |||| ||||| || | | ||||| ||||| || ||||| ||||| || ||||| |||| Sbjct 868964 CACCACCTCTCAATCTAAGGACCAAGTGCAAGGTAGACTCCTTTTGGATGTTGTAGTCAG 868905 Query 33201 ACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGG 33260 ||||| | || ||||||||||| ||| ||| || | ||| || ||||| | | Sbjct 868904 ACAAAGTTCTACCATCCTCCAATTGCTTACCAGCAAAGATCAGACGCTGTTGGTCAGGAG 868845 Query 33261 GTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAA 33320 | || || || || || |||| || || | | ||| |||||| | | | Sbjct 868844 GAATTCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTGTCGGAAGACTCCA 868785 Query 33321 CGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 | |||| || || || || || ||||| || ||||||||||||||||| || Sbjct 868784 CCTCCAAGGTGATAGTCTTACCGGTAAGGGTCTTTACGAAAATTTGCATTTT 868733 >seq2 Length=2687137 Score = 84.2 bits (92), Expect = 1e-11 Identities = 169/249 (68%), Gaps = 9/249 (4%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| ||||| || | || |||| ||||| || ||||| || || || ||||| || || Sbjct 1169893 ACCACCTCTCAATCTCAGAACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCGGA 1169952 Query 33202 CAAATTGAGTTG----GTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCG 33257 || ||||| ||| ||||||||||| ||| ||| || |||||||| ||||| | Sbjct 1169953 CA----GAGTTCTACCGTCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGTTGGTCAG 1170008 Query 33258 TGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTT 33317 || || ||||| || || |||| || || | | || |||||| || | Sbjct 1170009 GAGGAATTCCTTCCTTGTCTTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAGGACT 1170068 Query 33318 GAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTTAT-G 33376 || |||| || || || || || || | || || |||||||| ||||| ||| | Sbjct 1170069 CGACTTCCAAGGTAATGGTCTTACCGGTTAAGGTCTTGACGAAAATCTGCATTTTTGTCT 1170128 Query 33377 GTTAATGTT 33385 |||| |||| Sbjct 1170129 GTTACTGTT 1170137 >seq4 Length=1577441 Score = 82.4 bits (90), Expect = 5e-11 Identities = 160/236 (68%), Gaps = 8/236 (3%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||||||| | || ||||| || | || || || ||||| || || || ||||| Sbjct 1240390 ACCACCTCTTAATCTCAGGACCAAGTGAAGAGTGGATTCCTTTTGAATGTTATAGTCAGA 1240449 Query 33202 CAAATTGAGTTG----GTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCG 33257 | ||||| ||| ||||||||||| || ||| |||||||||||||| || | Sbjct 1240450 AA----GAGTTCTGCCGTCTTCCAATTGCTTACCTGCAAAGATTAAACGTTGCTGATCAG 1240505 Query 33258 TGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTT 33317 || || ||||| || || |||| || || | | ||| ||||| | | Sbjct 1240506 GAGGAATACCTTCCTTGTCCTGAATCTTAGACTTGACGTTGTCAATGGTGTCTGATGACT 1240565 Query 33318 GAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTT 33373 || || ||||| || || || || || || ||||| || ||||| ||||| ||| Sbjct 1240566 CCACCTCAAGAGTGATAGTCTTACCTGTTAGGGTTTTCACAAAAATCTGCATTTTT 1240621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318777557263878