Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F001708105.1_202016-08-12]
11 sequences; 9,597,535 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq2 170 2e-37
>seq2
Length=2687137
Score = 170 bits (188), Expect = 2e-37
Identities = 563/865 (65%), Gaps = 19/865 (2%)
Strand=Plus/Plus
Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919
||||| || || |||||| ||||| || ||||| || || || | || ||||| ||
Sbjct 442716 TTTTGGTAATCAGAAACTCTCTTTTCGAAGAAGTTGGTCTTACCAGCCAAAGAAATGTTC 442775
Query 12920 TCCATAAAATCGAAAGGATTTTTCGAACAATAGTA---TTTTTTACACCCTAATTCTAGT 12976
||||| ||||| || ||||| | || | ||| |||||| || | |||
Sbjct 442776 TCCATGAAATCAAATGGATTGGTG--ACGTT-GTACACTTTTTTGTTGCCCAGAGCTACC 442832
Query 12977 AACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATT 13036
| | ||| |||||||| ||||| | ||||| ||| || ||||||||||| |
Sbjct 442833 AGTAGTCTATCAGCAACGAACTCAACATACTGGCACATCAAGCTGCAGTTCATTCCCAGC 442892
Query 13037 AATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACT 13096
|| ||||| | ||| ||||| || | ||||||| || || || || || |||
Sbjct 442893 AAGGAAACAGGAAGAGCATCTGTGAAGTATCTTTTTTCAATCTCGACAGCCTCTGTAATA 442952
Query 13097 ATGTCTCTTATTACGTTCTCTAATGGAGGATTTGATAGA-TGCTTAAACATCATACATGC 13155
|| | | | | | ||| | ||| ||| | | || || | || || ||
Sbjct 442953 ATCTTTTCAACGATTTCCTC-ACTGGCTCTGTTGTTCAAGTGAGAGAATAGCAAGCAAGC 443011
Query 13156 AAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGG 13215
||| || ||| |||||||||||||| | || ||||| || || || || | ||| ||
Sbjct 443012 AAAGTCGGTGTGTAATCCTTCATCTCTGCAAATAAGCTCATTGGAGAAGGTCAAACCTGG 443071
Query 13216 CATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCC 13275
|||||| |||| ||||| | ||| || |||| ||| || || |||||||| || || ||
Sbjct 443072 CATAAGACCTCTCTTTTTCAACCAGAAGATAGAAGCGAAAGAGCCCGAAAAGAAGATACC 443131
Query 13276 TTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCCA 13335
|||||| || || || || | ||| | |||| | || | || | | | |||||
Sbjct 443132 TTCAACAGCAGCGAAGGCAACCAAACGTTCAGCGAACAAAGCATCGTCATCGGCAATCCA 443191
Query 13336 CTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAA 13395
| ||||||||| || |||| ||| | || || | || || || || || ||
Sbjct 443192 TCTCATGGCCCAGTCAGCCTTTTCTTTGATACATGGAATGGTCTCGATGGCATTGAACAA 443251
Query 13396 ATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGA 13455
| | ||| || ||| || |||||||| ||||| || || |||| ||
Sbjct 443252 GAATTCGGATTCTTTTGGATCTTTGATGTAAGTATCAATCAACAATGAGTAAGTTTCGGA 443311
Query 13456 ATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAAC 13515
|| || || |||||| ||||| ||||| ||||||||| | || || | | |||||
Sbjct 443312 GTGGATGTTCTCCATCATGATTTGAAAACCGTAAAAACATTTTGCTTCGGGAAGTTGAAC 443371
Query 13516 TTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaa 13575
|| | | || |||| | || ||||| || || || || ||| |||||||||||
Sbjct 443372 CTCAGCGCTGAAGTTTTCCACCAAATTTTCATTGACAATACCATCAGAGGCAGCAAAAAA 443431
Query 13576 aGCAAGTATGTGCT-TA---ATAAAttttttttCGTTTTCTGACA-AC--TTTAACCAAT 13628
||||| | || || ||||| | || || || || || || || ||| |
Sbjct 443432 GGCAAGAA----CTCTAGAGATAAAATACTTCTCATTGTCGTTCATACGATTATTCCAGT 443487
Query 13629 CTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCT 13688
| | ||||| ||| || |||| ||||| | |||||||| ||||| | |||| |
Sbjct 443488 CATGCAAATCCTTTCCCAAGTCTATTTCCTCGGCAGTCCAAAAGGAAGCTTCGGCCTGTT 443547
Query 13689 TATACATCATCCATATATCCTTATA 13713
| ||||| ||| || || | |||
Sbjct 443548 TGTACATTTGCCAGATGTCGTGATA 443572
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430982342221422
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |