Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F001708105.1_202016-08-12] 11 sequences; 9,597,535 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq2 170 2e-37 >seq2 Length=2687137 Score = 170 bits (188), Expect = 2e-37 Identities = 563/865 (65%), Gaps = 19/865 (2%) Strand=Plus/Plus Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919 ||||| || || |||||| ||||| || ||||| || || || | || ||||| || Sbjct 442716 TTTTGGTAATCAGAAACTCTCTTTTCGAAGAAGTTGGTCTTACCAGCCAAAGAAATGTTC 442775 Query 12920 TCCATAAAATCGAAAGGATTTTTCGAACAATAGTA---TTTTTTACACCCTAATTCTAGT 12976 ||||| ||||| || ||||| | || | ||| |||||| || | ||| Sbjct 442776 TCCATGAAATCAAATGGATTGGTG--ACGTT-GTACACTTTTTTGTTGCCCAGAGCTACC 442832 Query 12977 AACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATT 13036 | | ||| |||||||| ||||| | ||||| ||| || ||||||||||| | Sbjct 442833 AGTAGTCTATCAGCAACGAACTCAACATACTGGCACATCAAGCTGCAGTTCATTCCCAGC 442892 Query 13037 AATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACT 13096 || ||||| | ||| ||||| || | ||||||| || || || || || ||| Sbjct 442893 AAGGAAACAGGAAGAGCATCTGTGAAGTATCTTTTTTCAATCTCGACAGCCTCTGTAATA 442952 Query 13097 ATGTCTCTTATTACGTTCTCTAATGGAGGATTTGATAGA-TGCTTAAACATCATACATGC 13155 || | | | | | ||| | ||| ||| | | || || | || || || Sbjct 442953 ATCTTTTCAACGATTTCCTC-ACTGGCTCTGTTGTTCAAGTGAGAGAATAGCAAGCAAGC 443011 Query 13156 AAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGG 13215 ||| || ||| |||||||||||||| | || ||||| || || || || | ||| || Sbjct 443012 AAAGTCGGTGTGTAATCCTTCATCTCTGCAAATAAGCTCATTGGAGAAGGTCAAACCTGG 443071 Query 13216 CATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCC 13275 |||||| |||| ||||| | ||| || |||| ||| || || |||||||| || || || Sbjct 443072 CATAAGACCTCTCTTTTTCAACCAGAAGATAGAAGCGAAAGAGCCCGAAAAGAAGATACC 443131 Query 13276 TTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCCA 13335 |||||| || || || || | ||| | |||| | || | || | | | ||||| Sbjct 443132 TTCAACAGCAGCGAAGGCAACCAAACGTTCAGCGAACAAAGCATCGTCATCGGCAATCCA 443191 Query 13336 CTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAA 13395 | ||||||||| || |||| ||| | || || | || || || || || || Sbjct 443192 TCTCATGGCCCAGTCAGCCTTTTCTTTGATACATGGAATGGTCTCGATGGCATTGAACAA 443251 Query 13396 ATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGA 13455 | | ||| || ||| || |||||||| ||||| || || |||| || Sbjct 443252 GAATTCGGATTCTTTTGGATCTTTGATGTAAGTATCAATCAACAATGAGTAAGTTTCGGA 443311 Query 13456 ATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAAC 13515 || || || |||||| ||||| ||||| ||||||||| | || || | | ||||| Sbjct 443312 GTGGATGTTCTCCATCATGATTTGAAAACCGTAAAAACATTTTGCTTCGGGAAGTTGAAC 443371 Query 13516 TTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaa 13575 || | | || |||| | || ||||| || || || || ||| ||||||||||| Sbjct 443372 CTCAGCGCTGAAGTTTTCCACCAAATTTTCATTGACAATACCATCAGAGGCAGCAAAAAA 443431 Query 13576 aGCAAGTATGTGCT-TA---ATAAAttttttttCGTTTTCTGACA-AC--TTTAACCAAT 13628 ||||| | || || ||||| | || || || || || || || ||| | Sbjct 443432 GGCAAGAA----CTCTAGAGATAAAATACTTCTCATTGTCGTTCATACGATTATTCCAGT 443487 Query 13629 CTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCT 13688 | | ||||| ||| || |||| ||||| | |||||||| ||||| | |||| | Sbjct 443488 CATGCAAATCCTTTCCCAAGTCTATTTCCTCGGCAGTCCAAAAGGAAGCTTCGGCCTGTT 443547 Query 13689 TATACATCATCCATATATCCTTATA 13713 | ||||| ||| || || | ||| Sbjct 443548 TGTACATTTGCCAGATGTCGTGATA 443572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430982342221422