Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F001708105.1_202016-08-12]
11 sequences; 9,597,535 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq2 210 5e-49
seq4 163 7e-35
seq3 156 1e-32
>seq2
Length=2687137
Score = 210 bits (232), Expect = 5e-49
Identities = 390/564 (69%), Gaps = 20/564 (4%)
Strand=Plus/Minus
Query 268742 ATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGAC 268801
|||||||||||||||| ||||| |||||||||| || ||| |||| || | ||
Sbjct 443554 ATGTACAAACAGGCCGAAGCTTCCTTTTGGACTGCCGAGGAAATAGACTTGGGAAAGGAT 443495
Query 268802 TTAATAGATTGGAAAAATTTAA--AACCAGAAGAAAGAAGATTTATATCT-TATA-TTCT 268857
|| || ||||| ||| | ||| | || | |||| || ||||| || | ||||
Sbjct 443494 TTGCATGACTGGAATAATCGTATGAACGACAATGA-GAAGTATTTTATCTCTAGAGTTCT 443436
Query 268858 TGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCA 268917
||| |||||||| | ||||||||| || || |||||| | || || || ||| |
Sbjct 443435 TGCCTTTTTTGCTGCCTCTGATGGTATTGTCAATGAAAATTTGGTGGAAAACTTCAGCGC 443376
Query 268918 AGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATAT 268977
||||| || |||| ||||| | |||||||||||| || || || || || || ||
Sbjct 443375 TGAGGTTCAACTTCCCGAAGCAAAATGTTTTTACGGTTTTCAAATCATGATGGAGAACAT 443316
Query 268978 TCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAA 269037
|| || || | ||| | || || |||||||| || | ||| | |||||||
Sbjct 443315 CCACTCCGAAACTTACTCATTGTTGATTGATACTTACATCAAAGAT-----CCAAAAGAA 443261
Query 269038 AA-GACTATTTTCTTCTATGAGA-----ACTATGGACTGTGTGAGaaaaaaaTCTGAATG 269091
|| | | || ||| ||| | || || ||| | | | |||| |||| ||
Sbjct 443260 TCCGAAT-TCTTGTTCAATGCCATCGAGACCATTCCATGTATCAAAGAAAAGGCTGACTG 443202
Query 269092 GGCTCTGAAATGGATAAACGATAGCGCGCCTTA---CGGAGAAAGGTTAGTTGCTTTTGC 269148
||| ||| |||||| |||| || ||| || ||| | || ||||| || ||
Sbjct 443201 GGCCATGAGATGGATTGCCGATGACGATGCTTTGTTCGCTGAACGTTTGGTTGCCTTCGC 443142
Query 269149 CGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAG 269208
||||| |||||||| ||||||||||| ||||| || ||||||| |||||||| || ||
Sbjct 443141 TGCTGTTGAAGGTATCTTCTTTTCGGGCTCTTTCGCTTCTATCTTCTGGTTGAAAAAGAG 443082
Query 269209 AGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACA 269268
||| ||||||||||| || || ||||| || || | || |||| || ||||| |||||
Sbjct 443081 AGGTCTTATGCCAGGTTTGACCTTCTCCAATGAGCTTATTTGCAGAGATGAAGGATTACA 443022
Query 269269 CTGCGACTTCGCTTGTTTATTATT 269292
| |||||| ||||| || ||||
Sbjct 443021 CACCGACTTTGCTTGCTTGCTATT 442998
Score = 150 bits (166), Expect = 4e-31
Identities = 173/233 (74%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || ||||| | || || || || || || ||||| || ||||| || || |||||
Sbjct 1169891 ATACCACCTCTCAATCTCAGAACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCG 1169950
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| ||||||||||||||||| | ||| || ||||||||||| | | ||||| ||||||
Sbjct 1169951 GACAGAGTTCTACCGTCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGTTGGTCAGGA 1170010
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| |||||||| || || |||||||| | || || || || | ||| ||| | ||
Sbjct 1170011 GGAATTCCTTCCTTGTCTTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAGGACTCG 1170070
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562
|| || | ||||| |||||||| || | || || || || |||||||||||
Sbjct 1170071 ACTTCCAAGGTAATGGTCTTACCGGTTAAGGTCTTGACGAAAATCTGCATTTT 1170123
>seq4
Length=1577441
Score = 163 bits (180), Expect = 7e-35
Identities = 176/233 (76%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || ||||||| || || || | || | || ||||| || ||||| |||||||||
Sbjct 1240388 ATACCACCTCTTAATCTCAGGACCAAGTGAAGAGTGGATTCCTTTTGAATGTTATAGTCA 1240447
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| |||||||| |||||||| | ||| || || ||||| |||| | || |||||||||
Sbjct 1240448 GAAAGAGTTCTGCCGTCTTCCAATTGCTTACCTGCAAAGATTAAACGTTGCTGATCAGGA 1240507
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || ||||| || ||||||||||| | || || || || | ||| || | ||
Sbjct 1240508 GGAATACCTTCCTTGTCCTGAATCTTAGACTTGACGTTGTCAATGGTGTCTGATGACTCC 1240567
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562
||||| || || ||||||||||| || || ||||| ||||| |||||||||||
Sbjct 1240568 ACCTCAAGAGTGATAGTCTTACCTGTTAGGGTTTTCACAAAAATCTGCATTTT 1240620
Score = 140 bits (154), Expect = 7e-28
Identities = 169/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || ||||||| || || || | || | || ||||| || ||||| |||||||||
Sbjct 1239932 ATACCACCTCTTAATCTCAGGACCAAGTGAAGAGTGGATTCCTTTTGAATGTTATAGTCA 1239991
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| |||||||| |||||||| | ||| || || ||||| |||| | || |||||||||
Sbjct 1239992 GAAAGAGTTCTGCCGTCTTCCAATTGCTTACCTGCAAAGATTAAACGTTGCTGATCAGGA 1240051
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || ||||| || ||||||||||| | || || || || | ||| || | ||
Sbjct 1240052 GGAATACCTTCCTTGTCCTGAATCTTAGACTTGACGTTGTCAATGGTGTCTGATGACTCC 1240111
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||||| || ||||||||||| || || | || || || || || |||||
Sbjct 1240112 ACCTCGAGGGTAATAGTCTTGCCGGTTAAGGTCTTGACGAAGATTTGCAT 1240161
Score = 140 bits (154), Expect = 7e-28
Identities = 169/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || ||||||| || || || | || | || ||||| || ||||| |||||||||
Sbjct 1240160 ATACCACCTCTTAATCTCAGGACCAAGTGAAGAGTGGATTCCTTTTGAATGTTATAGTCA 1240219
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| |||||||| |||||||| | ||| || || ||||| |||| | || |||||||||
Sbjct 1240220 GAAAGAGTTCTGCCGTCTTCCAATTGCTTACCTGCAAAGATTAAACGTTGCTGATCAGGA 1240279
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || ||||| || ||||||||||| | || || || || | ||| || | ||
Sbjct 1240280 GGAATACCTTCCTTGTCCTGAATCTTAGACTTGACGTTGTCAATGGTGTCTGATGACTCC 1240339
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||||| || ||||||||||| || || | || || || || || |||||
Sbjct 1240340 ACCTCGAGGGTAATAGTCTTGCCGGTTAAGGTCTTGACGAAGATTTGCAT 1240389
Score = 134 bits (148), Expect = 3e-26
Identities = 148/197 (75%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| ||||| || ||||| ||||||||||| |||||||| |||||||| | ||| || ||
Sbjct 1239737 GTGGATTCCTTTTGAATGTTATAGTCAGAAAGAGTTCTGCCGTCTTCCAATTGCTTACCT 1239796
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| |||| | || ||||||||||| || ||||| || ||||||||||| | ||
Sbjct 1239797 GCAAAGATTAAACGTTGCTGATCAGGAGGAATACCTTCCTTGTCCTGAATCTTAGACTTG 1239856
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
|| || || | ||| || | || ||||| || ||||||||||| || || | ||
Sbjct 1239857 ACGTTGTCAATGGTGTCTGATGACTCCACCTCGAGGGTAATAGTCTTGCCGGTTAAGGTC 1239916
Query 104543 TTTACAAATATCTGCAT 104559
|| || || || |||||
Sbjct 1239917 TTGACGAAGATTTGCAT 1239933
>seq3
Length=1828518
Score = 156 bits (172), Expect = 1e-32
Identities = 173/231 (75%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392
|| ||||| | ||||| || | || || ||||| || || || || || ||||||||
Sbjct 868962 CCACCTCTCAATCTAAGGACCAAGTGCAAGGTAGACTCCTTTTGGATGTTGTAGTCAGAC 868903
Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452
| ||||||||| || || | ||| || |||||||| || || | |||||| ||||||||
Sbjct 868902 AAAGTTCTACCATCCTCCAATTGCTTACCAGCAAAGATCAGACGCTGTTGGTCAGGAGGA 868843
Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512
||||| || || ||||||||||| | || || || || | || ||| || || |||
Sbjct 868842 ATTCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTGTCGGAAGACTCCACC 868783
Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563
|| | || ||||||||||| ||||| || ||||| || || |||||||||
Sbjct 868782 TCCAAGGTGATAGTCTTACCGGTAAGGGTCTTTACGAAAATTTGCATTTTG 868732
Score = 95.1 bits (104), Expect = 3e-14
Identities = 94/122 (77%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 165098 GATAAGGATGAATGGAATACTTGGAATAAAATACACGATCCTGTTTTACATATAGAGCTA 165157
||||||||||||||| || ||||| | | |||||||||||||| ||||||||
Sbjct 262055 GATAAGGATGAATGGCTAACCTGGAAAGCCAGAACTGATCCTGTTTTACACATAGAGCTG 262114
Query 165158 AGAAGATGGGCAGATATGATGTTGATAGCACCCTTAACAGCAAACAGTTTAGCGAAGATA 165217
||||||||||||||||| || || | ||||| || || |||||| || || |||||
Sbjct 262115 AGAAGATGGGCAGATATTCTGGTGGTTGCACCTTTGACTTCAAACACCTTCGCCAAGATC 262174
Query 165218 GC 165219
||
Sbjct 262175 GC 262176
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151398237724788
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |