Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F001708105.1_202016-08-12]
11 sequences; 9,597,535 total letters
Query= NC_005902.1
Length=186250
Score E
Sequences producing significant alignments: (Bits) Value
seq4 87.8 2e-12
seq1 86.0 7e-12
>seq4
Length=1577441
Score = 87.8 bits (96), Expect = 2e-12
Identities = 107/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 19362 AAATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAGGCACATGTGGTATGATTTATC 19421
|||| ||||||||||||||||| | | ||||||||| || |||| | | |||
Sbjct 251672 AAATTGGTGATAAGTTTGCTTCCCGTCACGGTCAAAAAGGTACCATTGGTGTTACCTATA 251613
Query 19422 GTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGTGCCGGATCTTATTATTAACCCAC 19481
| || ||||||||||| || | | || ||||| || || ||| | ||||| |||||||
Sbjct 251612 GACACGAAGATATGCCATTCAGTGCGGAGGGTATCGTTCCAGATTTGATTATCAACCCAC 251553
Query 19482 ATGCTTTTCCAAGTCGAATGACGCTT 19507
|||| |||| ||| |||||| ||
Sbjct 251552 ATGCCATTCCTTCTCGTATGACGGTT 251527
>seq1
Length=3325186
Score = 86.0 bits (94), Expect = 7e-12
Identities = 377/589 (64%), Gaps = 26/589 (4%)
Strand=Plus/Minus
Query 164398 AATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCAGACGA 164457
|| ||||| || |||||| | ||||| ||||| ||| ||| | |||||| || ||
Sbjct 682113 AAATTTGAGGACATGGGAATTGGTGGTTTAGATTTAGAGTTTACCAAGATTTTCCGAAGA 682054
Query 164458 GCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAACATATA 164517
|| ||||| || ||| ||||| | | |||| | || || || | || |
Sbjct 682053 GCGTTTGCCTCAAGAATTTTTCCTCCTGGATTAATTGATAAGTTGGGAATCACCCACGTC 681994
Query 164518 AAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGATGCATT 164577
||||| || | || |||||||||| ||| || || ||| | || || || | |||
Sbjct 681993 AAAGGTCTTCTTTTGTATGGACCTCCAGGTACTGGAAAGACACTTATTGCCAGAAGAATT 681934
Query 164578 GC-TCAAGCTTTTAAATC---GCGACCCGTTAAAATTGTTAATGGTCCTGAATTATTGAA 164633
| || | | ||||| | || || |||||||| || ||||||||| | |
Sbjct 681933 GGATCTA--TGCTAAATGCAAGAGAACCA--AAAATTGTCAACGGTCCTGAAATTCTTTC 681878
Query 164634 CAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAGAAGA 164693
|||||||| ||| ||||| | ||| | | || | || |||| || || ||
Sbjct 681877 TAAATATGTGGGTTCCTCAGAGGAGAATATCCGTAATCTATTCAAGGACGCAGAGATTGA 681818
Query 164694 ACA-AAAG--AAAGCAGGTTTAGCTAGTAAATTACATGTTATTGTTTTTGATGAGATAGA 164750
| | |||| |||| || | ||| | || | ||| ||||||||||| | ||
Sbjct 681817 ATACAAAGCCAAAGGAGAT---GCTTCGTCTCTGCACATCATTATTTTTGATGAGTTGGA 681761
Query 164751 TGCTCTTTGCAAAAAACGTGGT----GATAATATTATTCATGAT--GCAG------TGGT 164798
| || | | |||| || | || || | || || || |||| | ||
Sbjct 681760 TTCTATCTTCAAACAAAGAGGCTCCCGAGGAGATGGAACAGGAGTCGCAGACAACGTCGT 681701
Query 164799 TAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATAATATTTTAATTGTAGG 164858
|||||| | || |||||||| |||||||| || | || || ||||| || | ||
Sbjct 681700 TAATCAACTTCTATCTAAAATGGATGGTGTCGATCAGCTCAACAACATTTTGGTTATTGG 681641
Query 164859 TATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGTCGATTAGAATT 164918
||||||||| ||| |||| | ||||| || ||| || || |||| ||| |||| || |
Sbjct 681640 TATGACCAATAGACGTGATCTGATTGACGAAGCTCTACTAAGACCCGGTAGATTCGATGT 681581
Query 164919 GAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAATTTTA 164967
| || | ||||| | || ||| ||| |||||| |||||| ||
Sbjct 681580 GCAAGTGGAAATTCATCTTCCTGACGAAGCAGGACGTAAACAAATTCTA 681532
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 595871918067600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |