Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F001708105.1_202016-08-12] 11 sequences; 9,597,535 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq4 87.8 2e-12 seq1 86.0 7e-12 >seq4 Length=1577441 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 19362 AAATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAGGCACATGTGGTATGATTTATC 19421 |||| ||||||||||||||||| | | ||||||||| || |||| | | ||| Sbjct 251672 AAATTGGTGATAAGTTTGCTTCCCGTCACGGTCAAAAAGGTACCATTGGTGTTACCTATA 251613 Query 19422 GTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGTGCCGGATCTTATTATTAACCCAC 19481 | || ||||||||||| || | | || ||||| || || ||| | ||||| ||||||| Sbjct 251612 GACACGAAGATATGCCATTCAGTGCGGAGGGTATCGTTCCAGATTTGATTATCAACCCAC 251553 Query 19482 ATGCTTTTCCAAGTCGAATGACGCTT 19507 |||| |||| ||| |||||| || Sbjct 251552 ATGCCATTCCTTCTCGTATGACGGTT 251527 >seq1 Length=3325186 Score = 86.0 bits (94), Expect = 7e-12 Identities = 377/589 (64%), Gaps = 26/589 (4%) Strand=Plus/Minus Query 164398 AATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCAGACGA 164457 || ||||| || |||||| | ||||| ||||| ||| ||| | |||||| || || Sbjct 682113 AAATTTGAGGACATGGGAATTGGTGGTTTAGATTTAGAGTTTACCAAGATTTTCCGAAGA 682054 Query 164458 GCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAACATATA 164517 || ||||| || ||| ||||| | | |||| | || || || | || | Sbjct 682053 GCGTTTGCCTCAAGAATTTTTCCTCCTGGATTAATTGATAAGTTGGGAATCACCCACGTC 681994 Query 164518 AAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGATGCATT 164577 ||||| || | || |||||||||| ||| || || ||| | || || || | ||| Sbjct 681993 AAAGGTCTTCTTTTGTATGGACCTCCAGGTACTGGAAAGACACTTATTGCCAGAAGAATT 681934 Query 164578 GC-TCAAGCTTTTAAATC---GCGACCCGTTAAAATTGTTAATGGTCCTGAATTATTGAA 164633 | || | | ||||| | || || |||||||| || ||||||||| | | Sbjct 681933 GGATCTA--TGCTAAATGCAAGAGAACCA--AAAATTGTCAACGGTCCTGAAATTCTTTC 681878 Query 164634 CAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAGAAGA 164693 |||||||| ||| ||||| | ||| | | || | || |||| || || || Sbjct 681877 TAAATATGTGGGTTCCTCAGAGGAGAATATCCGTAATCTATTCAAGGACGCAGAGATTGA 681818 Query 164694 ACA-AAAG--AAAGCAGGTTTAGCTAGTAAATTACATGTTATTGTTTTTGATGAGATAGA 164750 | | |||| |||| || | ||| | || | ||| ||||||||||| | || Sbjct 681817 ATACAAAGCCAAAGGAGAT---GCTTCGTCTCTGCACATCATTATTTTTGATGAGTTGGA 681761 Query 164751 TGCTCTTTGCAAAAAACGTGGT----GATAATATTATTCATGAT--GCAG------TGGT 164798 | || | | |||| || | || || | || || || |||| | || Sbjct 681760 TTCTATCTTCAAACAAAGAGGCTCCCGAGGAGATGGAACAGGAGTCGCAGACAACGTCGT 681701 Query 164799 TAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATAATATTTTAATTGTAGG 164858 |||||| | || |||||||| |||||||| || | || || ||||| || | || Sbjct 681700 TAATCAACTTCTATCTAAAATGGATGGTGTCGATCAGCTCAACAACATTTTGGTTATTGG 681641 Query 164859 TATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGTCGATTAGAATT 164918 ||||||||| ||| |||| | ||||| || ||| || || |||| ||| |||| || | Sbjct 681640 TATGACCAATAGACGTGATCTGATTGACGAAGCTCTACTAAGACCCGGTAGATTCGATGT 681581 Query 164919 GAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAATTTTA 164967 | || | ||||| | || ||| ||| |||||| |||||| || Sbjct 681580 GCAAGTGGAAATTCATCTTCCTGACGAAGCAGGACGTAAACAAATTCTA 681532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595871918067600