Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F001708105.1_202016-08-12]
11 sequences; 9,597,535 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq4 140 3e-28
seq2 113 4e-20
seq3 104 2e-17
>seq4
Length=1577441
Score = 140 bits (154), Expect = 3e-28
Identities = 172/235 (73%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832
||| || || ||||| |||| || |||||||| | ||| ||||||||||| | |||||
Sbjct 1240383 TTTGCATACCACCTCTTAATCTCAGGACCAAGTGAAGAGTGGATTCCTTTTGAATGTTAT 1240442
Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892
| || | ||| || || |||| || || || |||||||||| | ||||||||
Sbjct 1240443 AGTCAGAAAGAGTTCTGCCGTCTTCCAATTGCTTACCTGCAAAGATTAAACGTTGCTGAT 1240502
Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952
| |||||||||||||| ||||| | ||| || | ||||||| | | | ||||| |
Sbjct 1240503 CAGGAGGAATACCTTCCTTGTCCTGAATCTTAGACTTGACGTTGTCAATGGTGTCTGATG 1240562
Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| || |||| ||||| || || || || || ||||||||||| ||||||||
Sbjct 1240563 ACTCCACCTCAAGAGTGATAGTCTTACCTGTTAGGGTTTTCACAAAAATCTGCAT 1240617
Score = 113 bits (124), Expect = 4e-20
Identities = 166/235 (71%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832
||| || || ||||| |||| || |||||||| | ||| ||||||||||| | |||||
Sbjct 1239927 TTTGCATACCACCTCTTAATCTCAGGACCAAGTGAAGAGTGGATTCCTTTTGAATGTTAT 1239986
Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892
| || | ||| || || |||| || || || |||||||||| | ||||||||
Sbjct 1239987 AGTCAGAAAGAGTTCTGCCGTCTTCCAATTGCTTACCTGCAAAGATTAAACGTTGCTGAT 1240046
Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952
| |||||||||||||| ||||| | ||| || | ||||||| | | | ||||| |
Sbjct 1240047 CAGGAGGAATACCTTCCTTGTCCTGAATCTTAGACTTGACGTTGTCAATGGTGTCTGATG 1240106
Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| || || | || || || || || || | || || || ||||| |||||
Sbjct 1240107 ACTCCACCTCGAGGGTAATAGTCTTGCCGGTTAAGGTCTTGACGAAGATTTGCAT 1240161
Score = 113 bits (124), Expect = 4e-20
Identities = 166/235 (71%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832
||| || || ||||| |||| || |||||||| | ||| ||||||||||| | |||||
Sbjct 1240155 TTTGCATACCACCTCTTAATCTCAGGACCAAGTGAAGAGTGGATTCCTTTTGAATGTTAT 1240214
Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892
| || | ||| || || |||| || || || |||||||||| | ||||||||
Sbjct 1240215 AGTCAGAAAGAGTTCTGCCGTCTTCCAATTGCTTACCTGCAAAGATTAAACGTTGCTGAT 1240274
Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952
| |||||||||||||| ||||| | ||| || | ||||||| | | | ||||| |
Sbjct 1240275 CAGGAGGAATACCTTCCTTGTCCTGAATCTTAGACTTGACGTTGTCAATGGTGTCTGATG 1240334
Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| || || | || || || || || || | || || || ||||| |||||
Sbjct 1240335 ACTCCACCTCGAGGGTAATAGTCTTGCCGGTTAAGGTCTTGACGAAGATTTGCAT 1240389
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| || ||||||| || || ||||| | ||| ||||||||||| | |||||| ||
Sbjct 1239707 CCACCCCTCAATCTTAAAACTAAGTGAAGAGTGGATTCCTTTTGAATGTTATAGTCAGAA 1239766
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| ||| || || |||| || || || |||||||||| | ||||||||| ||||||
Sbjct 1239767 AGAGTTCTGCCGTCTTCCAATTGCTTACCTGCAAAGATTAAACGTTGCTGATCAGGAGGA 1239826
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960
|||||||| ||||| | ||| || | ||||||| | | | ||||| | || ||
Sbjct 1239827 ATACCTTCCTTGTCCTGAATCTTAGACTTGACGTTGTCAATGGTGTCTGATGACTCCACC 1239886
Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| | || || || || || || | || || || ||||| |||||
Sbjct 1239887 TCGAGGGTAATAGTCTTGCCGGTTAAGGTCTTGACGAAGATTTGCAT 1239933
>seq2
Length=2687137
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| |||||||||| || |||| |||||||||||| ||||| || | ||| || ||| |
Sbjct 1169894 CCACCTCTCAATCTCAGAACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCGGAC 1169953
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| ||| | || |||| || || || |||| || || | ||| || || ||||||
Sbjct 1169954 AGAGTTCTACCGTCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGTTGGTCAGGAGGA 1170013
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960
|| ||||| ||||| | ||| || | ||||||| | ||| ||||| | | |||||
Sbjct 1170014 ATTCCTTCCTTGTCTTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAGGACTCGACT 1170073
Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| | || ||||| || || || | || || || || ||||||||
Sbjct 1170074 TCCAAGGTAATGGTCTTACCGGTTAAGGTCTTGACGAAAATCTGCAT 1170120
>seq3
Length=1828518
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| |||||||||| | ||||||||||| ||||| |||||||| | ||| || || |
Sbjct 868962 CCACCTCTCAATCTAAGGACCAAGTGCAAGGTAGACTCCTTTTGGATGTTGTAGTCAGAC 868903
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| ||| | |||||||| || || || ||||||| | | || || || ||||||
Sbjct 868902 AAAGTTCTACCATCCTCCAATTGCTTACCAGCAAAGATCAGACGCTGTTGGTCAGGAGGA 868843
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960
|| || || ||||| | ||| || | ||||||| | | | |||||| | || ||
Sbjct 868842 ATTCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTGTCGGAAGACTCCACC 868783
Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| | ||||| || || || ||||| || || || || || |||||
Sbjct 868782 TCCAAGGTGATAGTCTTACCGGTAAGGGTCTTTACGAAAATTTGCAT 868736
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448291138359960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |