Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F001708105.1_202016-08-12] 11 sequences; 9,597,535 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq2 179 4e-40 >seq2 Length=2687137 Score = 179 bits (198), Expect = 4e-40 Identities = 597/921 (65%), Gaps = 29/921 (3%) Strand=Plus/Plus Query 21185 TTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGAT 21244 ||||| |||||| |||||| |||||||| || || ||||| || |||| || || Sbjct 442716 TTTTGGTAATCAGAAACTCTCTTTTCGAAGAAGTTGGTCTTACCAGCCAAAGAAATGTTC 442775 Query 21245 TCCATAAAATCAAATGGATTT-TCAGATT-TAAA-TATTTTATTACAACCCAGTTCTGAT 21301 ||||| |||||||||||||| | | || || | | |||| || | |||| || Sbjct 442776 TCCATGAAATCAAATGGATTGGTGACGTTGTACACTTTTTTGTTGC---CCAGAGCTACC 442832 Query 21302 AATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATC 21361 | || |||||| || || || || | ||| || ||||| || || ||||| || | | Sbjct 442833 AGTAGTCTATCAGCAACGAACTCAACATACTGGCACATCAAGCTGCAGTTCATTCCCAGC 442892 Query 21362 AATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATT 21421 || ||||||||||| | ||| || | |||||| || ||| || || ||| Sbjct 442893 AAGGAAACAGGAAGAGCATCTGTGAAGTATCTTTTTTCAATCTCGACAGCCTCTGTAATA 442952 Query 21422 ATATTTATTATCCTAGATGTACTAGGGGGATACAAT----AATTGTTTAAACATCAAACA 21477 || ||| || ||| | || || | | || || || | ||| || Sbjct 442953 ATCTTT----TCAACGATTTCCTCACTGGCTCTGTTGTTCAAGTGAGAGAATAGCAAGCA 443008 Query 21478 TGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACC 21537 ||||| || || || |||||||| || | || | ||||| || || || ||||| Sbjct 443009 AGCAAAGTCGGTGTGTAATCCTTCATCTCTGCAAATAAGCTCATTGGAGAAGGTCAAACC 443068 Query 21538 GGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAAT 21597 ||||| | ||||||||||| ||||| || || || || || | || |||||||| || Sbjct 443069 TGGCATAAGACCTCTCTTTTTCAACCAGAAGATAGAAGCGAAAGAGCCCGAAAAGAAGAT 443128 Query 21598 GCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATAT 21657 || ||||| ||||| || ||||| || |||||| || | || || | ||| || Sbjct 443129 ACCTTCAACAGCAGCGAAGGCAACCAAACGTTCAGCGAACAAAGCATCGTCATCGGCAAT 443188 Query 21658 CCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAA 21717 |||| | ||||| | ||||||||||| ||||| ||| || || || || || || Sbjct 443189 CCATCTCATGGCCCAGTCAGCCTTTTCTTTGATACATGGAATGGTCTCGATGGCATTGAA 443248 Query 21718 -AAGATGAtt-tttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATT 21775 |||| ||| ||| | | ||| | ||| || || Sbjct 443249 CAAGA--ATTCGGATTCTTTTGGATCTTTGATGTAAGTATCAATCAACAATGAGTAAGTT 443306 Query 21776 TCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACAT 21835 || || || || || || ||| || ||||| |||||||||||| |||| || | | | Sbjct 443307 TCGGAGTGGATGTTCTCCATCATGATTTGAAAACCGTAAAAACATTTTGCTTCGGGAAGT 443366 Query 21836 TGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCA 21895 |||||||| | || || |||| |||||||| || || |||||| ||| ||| Sbjct 443367 TGAACCTCAGCGCTGAAGTTTTCCACCAAATTTTCATTGACAATACCATCAGAGGCAGCA 443426 Query 21896 AAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAAT----TTTTTCCA 21951 ||||| || | | | |||||||| || || || ||| || || ||||| Sbjct 443427 AAAAAGGCAAGAACTCTAGAGATAAAATACTTCTCATTGTC-GTTCATACGATTATTCCA 443485 Query 21952 ATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCCTT 22011 || ||||| ||| || |||| ||| || | ||||||||| ||| |||| Sbjct 443486 GTCATGCAAATCCTTTCCCAAGTCTATTTCCTCGGCAGTCCAAAAGGAAGCTTCGGCCTG 443545 Query 22012 TTTATACATAATCCAGATATCATTATATATTATTGGAAATATTAC-AAAC--CTGTTATT 22068 ||| ||||| |||||| || | |||| | | || || | || |||| | ||||| Sbjct 443546 TTTGTACATTTGCCAGATGTCGTGATATTTCAAAGGGAAGAGAACGAAACGACGTTTATT 443605 Query 22069 TGATTCAACTAAAAGTGGTTC 22089 ||||||||| ||||| || Sbjct 443606 ---TTCAACTAAGAGTGGCTC 443623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531900726863640