Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F001708105.1_202016-08-12]
11 sequences; 9,597,535 total letters
Query= NC_007151.1
Length=149622
Score E
Sequences producing significant alignments: (Bits) Value
seq2 109 5e-19
seq4 104 2e-17
>seq2
Length=2687137
Score = 109 bits (120), Expect = 5e-19
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825
|||||||| | || || || || ||||| || || | || ||| | ||| | || ||
Sbjct 1170123 AAAATGCAGATTTTCGTCAAGACCTTAACCGGTAAGACCATTACCTTGGAAGTCGAGTCC 1170064
Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885
|||||||||||| | ||||| |||||| ||||| ||||| || ||||| ||
Sbjct 1170063 TCCGACACCATCGACAACGTCAAGTCCAAGATTCAAGACAAGGAAGGAATTCCTCCTGAC 1170004
Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945
|||||| | | |||| | || || ||| | ||||| | ||||| | ||||||
Sbjct 1170003 CAACAACGTTTGATTTTTGCTGGTAAGCAATTGGAAGACGGTAGAACTCTGTCCGACTAC 1169944
Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995
||||| || || || |||||| | || ||||| |||||| | ||||| ||
Sbjct 1169943 AACATCCAGAAGGAGTCTACTTTGCACCTGGTTCTGAGATTGAGAGGTGG 1169894
Score = 87.8 bits (96), Expect = 2e-12
Identities = 191/283 (67%), Gaps = 10/283 (4%)
Strand=Plus/Plus
Query 119940 CAAGCAAAGTCGGTGTGTAGTCCTTCGTCTCTGGAAATGAGTTCGTTGCTGTAAGTCAAG 119999
||||||||||||||||||| |||||| |||||| |||| || || ||| | | |||||
Sbjct 443007 CAAGCAAAGTCGGTGTGTAATCCTTCATCTCTGCAAATAAGCTCATTGGAGAAGGTCAAA 443066
Query 120000 CCGGGTAGAGCTCCTTTTTTCGAGTCTTTGATATAGTAGATTGCAGCAAAACTACCAGaa 120059
|| || | | ||| | || ||| | || |||| | ||| ||| || |||
Sbjct 443067 CCTGGCATAAGACCTCTCTT------TTTCAACCAGAAGATAGAAGCGAAAGAGCCCGAA 443120
Query 120060 aaaaaGACGCCTTCGACGATAGCAAAAGCGACCATGCGTTCGGCGAATGTGGCAGATTGA 120119
|| |||| ||||| || ||| || || |||| ||||| ||||| ||| | |
Sbjct 443121 AAGAAGATACCTTCAACAGCAGCGAAGGCAACCAAACGTTCAGCGAACAAAGCATCGTCA 443180
Query 120120 TTTTCGATCCATTTTTGAGCCCAAGCCGCCTTCTGCTTGACACTATCTATATG--CTCGA 120177
| | |||||| | ||||| | ||||| | |||| || || | ||| |||||
Sbjct 443181 TCGGCAATCCATCTCATGGCCCAGTCAGCCTTTTCTTTGATAC-ATGGA-ATGGTCTCGA 443238
Query 120178 TCGCATTCAAAATCCTGTCGCATTCTTGGGGATCTTTAATGTA 120220
| ||||| || | ||| |||||| |||||||| |||||
Sbjct 443239 TGGCATTGAACAAGAATTCGGATTCTTTTGGATCTTTGATGTA 443281
>seq4
Length=1577441
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
|||||| | || || || || ||||| || || | || ||| |||| | || |||
Sbjct 1240161 ATGCAAATCTTCGTCAAGACCTTAACCGGCAAGACTATTACCCTCGAGGTGGAGTCATCA 1240102
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
|||||||| || | ||||| |||||| ||||| ||||| || ||||| |||||
Sbjct 1240101 GACACCATTGACAACGTCAAGTCTAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCAG 1240042
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948
||| | | || | | || || ||| | ||||| | |||| | |||||||||
Sbjct 1240041 CAACGTTTAATCTTTGCAGGTAAGCAATTGGAAGACGGCAGAACTCTTTCTGACTATAAC 1239982
Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995
|||||||| ||||| ||| | || ||||||||||| | ||||| ||
Sbjct 1239981 ATTCAAAAGGAATCCACTCTTCACTTGGTCCTGAGATTAAGAGGTGG 1239935
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
|||||| | || || || || ||||| || || | || ||| |||| | || |||
Sbjct 1240389 ATGCAAATCTTCGTCAAGACCTTAACCGGCAAGACTATTACCCTCGAGGTGGAGTCATCA 1240330
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
|||||||| || | ||||| |||||| ||||| ||||| || ||||| |||||
Sbjct 1240329 GACACCATTGACAACGTCAAGTCTAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCAG 1240270
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948
||| | | || | | || || ||| | ||||| | |||| | |||||||||
Sbjct 1240269 CAACGTTTAATCTTTGCAGGTAAGCAATTGGAAGACGGCAGAACTCTTTCTGACTATAAC 1240210
Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995
|||||||| ||||| ||| | || ||||||||||| | ||||| ||
Sbjct 1240209 ATTCAAAAGGAATCCACTCTTCACTTGGTCCTGAGATTAAGAGGTGG 1240163
Score = 104 bits (114), Expect = 2e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825
|||||||| | ||||| ||||| |||| || || | ||||| | || | || |||
Sbjct 1240620 AAAATGCAGATTTTTGTGAAAACCCTAACAGGTAAGACTATCACTCTTGAGGTGGAGTCA 1240561
Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885
|||||||| || | ||||| |||||| ||||| ||||| || ||||| |||
Sbjct 1240560 TCAGACACCATTGACAACGTCAAGTCTAAGATTCAGGACAAGGAAGGTATTCCTCCTGAT 1240501
Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945
|| ||| | | || | | || || ||| | ||||| | |||| | ||||||
Sbjct 1240500 CAGCAACGTTTAATCTTTGCAGGTAAGCAATTGGAAGACGGCAGAACTCTTTCTGACTAT 1240441
Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995
||||||||||| ||||| ||| | || ||||||||||| | ||||| ||
Sbjct 1240440 AACATTCAAAAGGAATCCACTCTTCACTTGGTCCTGAGATTAAGAGGTGG 1240391
Score = 82.4 bits (90), Expect = 7e-11
Identities = 137/198 (69%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
|||||| | || || || || ||||| || || | || ||| |||| | || |||
Sbjct 1239933 ATGCAAATCTTCGTCAAGACCTTAACCGGCAAGACTATTACCCTCGAGGTGGAGTCATCA 1239874
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
|||||||| || | ||||| |||||| ||||| ||||| || ||||| |||||
Sbjct 1239873 GACACCATTGACAACGTCAAGTCTAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCAG 1239814
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948
||| | | || | | || || ||| | ||||| | |||| | |||||||||
Sbjct 1239813 CAACGTTTAATCTTTGCAGGTAAGCAATTGGAAGACGGCAGAACTCTTTCTGACTATAAC 1239754
Query 26949 ATTCAAAAAGAATCTACT 26966
|||||||| ||||| |||
Sbjct 1239753 ATTCAAAAGGAATCCACT 1239736
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478662334183920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |