Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F001708105.1_202016-08-12] 11 sequences; 9,597,535 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq4 113 4e-20 seq2 109 5e-19 seq3 87.8 2e-12 >seq4 Length=1577441 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || ||||| || || | |||||| |||| || ||| | Sbjct 1239933 ATGCAAATCTTCGTCAAGACCTTAACCGGCAAGACTATTACCCTCGAGGTGGAGTCATCA 1239874 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | ||||| |||||| ||||| ||||| || ||||| ||||| Sbjct 1239873 GACACCATTGACAACGTCAAGTCTAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCAG 1239814 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | | || | | || |||||| | ||||| | ||||| | || |||||| Sbjct 1239813 CAACGTTTAATCTTTGCAGGTAAGCAATTGGAAGACGGCAGAACTCTTTCTGACTATAAC 1239754 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||||| ||||| || |||| ||||| ||||||||||| || || Sbjct 1239753 ATTCAAAAGGAATCCACTCTTCACTTAGTTTTAAGATTGAGGGGTGG 1239707 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || ||||| || || | |||||| |||| || ||| | Sbjct 1240161 ATGCAAATCTTCGTCAAGACCTTAACCGGCAAGACTATTACCCTCGAGGTGGAGTCATCA 1240102 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | ||||| |||||| ||||| ||||| || ||||| ||||| Sbjct 1240101 GACACCATTGACAACGTCAAGTCTAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCAG 1240042 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | | || | | || |||||| | ||||| | ||||| | || |||||| Sbjct 1240041 CAACGTTTAATCTTTGCAGGTAAGCAATTGGAAGACGGCAGAACTCTTTCTGACTATAAC 1239982 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||||| ||||| || |||| || || | ||||| ||||| || Sbjct 1239981 ATTCAAAAGGAATCCACTCTTCACTTGGTCCTGAGATTAAGAGGTGG 1239935 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || ||||| || || | |||||| |||| || ||| | Sbjct 1240389 ATGCAAATCTTCGTCAAGACCTTAACCGGCAAGACTATTACCCTCGAGGTGGAGTCATCA 1240330 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | ||||| |||||| ||||| ||||| || ||||| ||||| Sbjct 1240329 GACACCATTGACAACGTCAAGTCTAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCAG 1240270 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | | || | | || |||||| | ||||| | ||||| | || |||||| Sbjct 1240269 CAACGTTTAATCTTTGCAGGTAAGCAATTGGAAGACGGCAGAACTCTTTCTGACTATAAC 1240210 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||||| ||||| || |||| || || | ||||| ||||| || Sbjct 1240209 ATTCAAAAGGAATCCACTCTTCACTTGGTCCTGAGATTAAGAGGTGG 1240163 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 |||||||| | ||||| ||||| |||| || || | || || | || || ||| | Sbjct 1240620 AAAATGCAGATTTTTGTGAAAACCCTAACAGGTAAGACTATCACTCTTGAGGTGGAGTCA 1240561 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 |||||||| || | ||||| |||||| ||||| ||||| || ||||| ||| Sbjct 1240560 TCAGACACCATTGACAACGTCAAGTCTAAGATTCAGGACAAGGAAGGTATTCCTCCTGAT 1240501 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || || | | || | | || |||||| | ||||| | ||||| | || ||| Sbjct 1240500 CAGCAACGTTTAATCTTTGCAGGTAAGCAATTGGAAGACGGCAGAACTCTTTCTGACTAT 1240441 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||||||||| ||||| || |||| || || | ||||| ||||| || Sbjct 1240440 AACATTCAAAAGGAATCCACTCTTCACTTGGTCCTGAGATTAAGAGGTGG 1240391 >seq2 Length=2687137 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 |||||||| | || || || || ||||| || || | |||||| | ||||||||| || Sbjct 1170123 AAAATGCAGATTTTCGTCAAGACCTTAACCGGTAAGACCATTACCTTGGAAGTCGAGTCC 1170064 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 |||||||||||| | ||||| |||||| ||||| ||||| || ||||| || Sbjct 1170063 TCCGACACCATCGACAACGTCAAGTCCAAGATTCAAGACAAGGAAGGAATTCCTCCTGAC 1170004 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 ||||| | |||||| | || |||||| | ||||| | |||| | ||| || Sbjct 1170003 CAACAACGTTTGATTTTTGCTGGTAAGCAATTGGAAGACGGTAGAACTCTGTCCGACTAC 1169944 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||| || || || ||||| | || | || | ||||||||||| || Sbjct 1169943 AACATCCAGAAGGAGTCTACTTTGCACCTGGTTCTGAGATTGAGAGGTGG 1169894 Score = 89.7 bits (98), Expect = 4e-13 Identities = 368/575 (64%), Gaps = 33/575 (6%) Strand=Plus/Plus Query 104602 ACTCGTTTTTCaaaaaaaTTAGTCTTGCCCTCCAGAGAAATATTATTCATAAATTCGAAA 104661 |||| ||||| || || || ||||| || ||| |||||| || | ||| || || || Sbjct 442731 ACTCTCTTTTCGAAGAAGTTGGTCTTACCAGCCAAAGAAATGTTCTCCATGAAATCAAAT 442790 Query 104662 GGATTCA--AAGTCTTAAAATATTTTTCGTAGCCAAGCTCGATCAACAGTCGATCCGCCA 104719 ||||| | || || | | |||| || ||| || | | || |||| ||| || | Sbjct 442791 GGATTGGTGACGTTGTACACTTTTTT--GTTGCCCAGAGCTACCAGTAGTCTATCAGCAA 442848 Query 104720 CAAATTCGATGTACTCGCACATAGAATGTGCA-TTCATGCCCAGCATTGCGACGGGTAAA 104778 | || || | |||| |||||| || |||| ||||| ||||||| | || || | | Sbjct 442849 CGAACTCAACATACTGGCACATC-AAGCTGCAGTTCATTCCCAGCAAGGAAACAGGAAGA 442907 Query 104779 GCGTTAGTaaaaaaaTCTTTCTCGATGTCCACGGCTTCCTTAAACATGTTCAGCACCTTG 104838 || | || || | ||| || || || || || || ||| || || Sbjct 442908 GCATCTGTGAAGTATCTTTTTTCAATCTCGACAGCCTCTGTAATAATCTT---------- 442957 Query 104839 CTTTCAGAAAGCTTGTCCTCTTTGGCAATATATTTGTTGT-----AATAG-AGGCAGGCA 104892 |||| | | || ||||| |||| | | || || ||||| | ||| ||| Sbjct 442958 --TTCA--ACGATT-TCCTCACTGGCTCTGTTGTTCAAGTGAGAGAATAGCAAGCAAGCA 443012 Query 104893 AAGTCTGTGTGCAATCCTTCATCTCTAGAAATAAGTTCGTTGCTGTAAGTCAAGCCAGGT 104952 ||||| ||||| |||||||||||||| ||||||| || ||| | | ||||| || || Sbjct 443013 AAGTCGGTGTGTAATCCTTCATCTCTGCAAATAAGCTCATTGGAGAAGGTCAAACCTGGC 443072 Query 104953 AGAGCCCCtttttttGTGTCTTTAATATAGTAGATGGCAGCAAAACTACCGGAGAAAAAG 105012 | | ||| | || ||| | || |||| | ||| ||| || || || ||| Sbjct 443073 ATAAGACCTCTCTT------TTTCAACCAGAAGATAGAAGCGAAAGAGCCCGAAAAGAAG 443126 Query 105013 ACACCTTCGACGATGGCAAACGCGACCATGCGTTCGGCGAATGTAGCAGTTTGACTTTCA 105072 | |||||| || || || || |||| ||||| ||||| |||| | | || Sbjct 443127 ATACCTTCAACAGCAGCGAAGGCAACCAAACGTTCAGCGAACAAAGCATCGTCATCGGCA 443186 Query 105073 ATCCATTTCTGAGCCCATGTTGCCTTCCGTTTGACGCTATCAATGTGCTCGATGGCATTC 105132 |||||| || ||||| ||||| ||||| | |||| |||||||||||| Sbjct 443187 ATCCATCTCATGGCCCAGTCAGCCTTTTCTTTGATACATGGAATGGTCTCGATGGCATTG 443246 Query 105133 AAAATCCTGTCGCATTCCTGAGGATCTTTAATGTA 105167 || | ||| |||| | |||||||| ||||| Sbjct 443247 AACAAGAATTCGGATTCTTTTGGATCTTTGATGTA 443281 >seq3 Length=1828518 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 |||||||||| | || ||||| || | || || || | || ||| | || || ||| | Sbjct 868732 CAAAATGCAAATTTTCGTAAAGACCCTTACCGGTAAGACTATCACCTTGGAGGTGGAGTC 868791 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 |||||| || || | ||||| |||||| ||||| || || || ||||| || Sbjct 868792 TTCCGACACTATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCTCCTGA 868851 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 |||||| | ||||| | | || |||||| | || |||| |||| | || || Sbjct 868852 CCAACAGCGTCTGATCTTTGCTGGTAAGCAATTGGAGGATGGTAGAACTTTGTCTGACTA 868911 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||| ||||| || ||||| | || || || | ||||||||||| || Sbjct 868912 CAACATCCAAAAGGAGTCTACCTTGCACTTGGTCCTTAGATTGAGAGGTGG 868962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429935942361705