Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F001708105.1_202016-08-12]
11 sequences; 9,597,535 total letters
Query= NC_007767.1
Length=132959
Score E
Sequences producing significant alignments: (Bits) Value
seq4 91.5 1e-13
>seq4
Length=1577441
Score = 91.5 bits (100), Expect = 1e-13
Identities = 161/232 (69%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 115282 AAAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTC 115341
||||||||| |||||||| ||||| || || || || || || || | || ||||||
Sbjct 1240621 AAAAATGCAGATTTTTGTGAAAACCCTAACAGGTAAGACTATCACTCTTGAGGTGGAGTC 1240562
Query 115342 CAGCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTG 115400
||||| ||| |||| || || || ||| || || ||||| | || ||
Sbjct 1240561 ATCAGACACCATTG-ACAACGTCAAGTCTAAGATTCAGGACAAGGAAGGTATTCCTCCTG 1240503
Query 115401 ATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATT 115460
|||||||| | | || | ||| || || ||||| ||||| | || ||| | | || |
Sbjct 1240502 ATCAGCAACGTTTAATCTTTGCAGGTAAGCAATTGGAAGACGGCAGAACTCTTTCTGACT 1240443
Query 115461 ATAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512
||||||||||||| || || ||| | || |||| ||||||| |||| ||
Sbjct 1240442 ATAACATTCAAAAGGAATCCACTCTTCACTTGGTCCTGAGATTAAGAGGTGG 1240391
Score = 89.7 bits (98), Expect = 4e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345
|||||||| || ||||| || | || || || || |||||| |||| ||||||
Sbjct 1240161 ATGCAAATCTTCGTCAAGACCTTAACCGGCAAGACTATTACCCTCGAGGTGGAGTCATCA 1240102
Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404
||||| ||| |||| || || || ||| || || ||||| | || ||||||
Sbjct 1240101 GACACCATTG-ACAACGTCAAGTCTAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCA 1240043
Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464
|||| | | || | ||| || || ||||| ||||| | || ||| | | || |||||
Sbjct 1240042 GCAACGTTTAATCTTTGCAGGTAAGCAATTGGAAGACGGCAGAACTCTTTCTGACTATAA 1239983
Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512
||||||||| || || ||| | || |||| ||||||| |||| ||
Sbjct 1239982 CATTCAAAAGGAATCCACTCTTCACTTGGTCCTGAGATTAAGAGGTGG 1239935
Score = 89.7 bits (98), Expect = 4e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345
|||||||| || ||||| || | || || || || |||||| |||| ||||||
Sbjct 1240389 ATGCAAATCTTCGTCAAGACCTTAACCGGCAAGACTATTACCCTCGAGGTGGAGTCATCA 1240330
Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404
||||| ||| |||| || || || ||| || || ||||| | || ||||||
Sbjct 1240329 GACACCATTG-ACAACGTCAAGTCTAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCA 1240271
Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464
|||| | | || | ||| || || ||||| ||||| | || ||| | | || |||||
Sbjct 1240270 GCAACGTTTAATCTTTGCAGGTAAGCAATTGGAAGACGGCAGAACTCTTTCTGACTATAA 1240211
Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512
||||||||| || || ||| | || |||| ||||||| |||| ||
Sbjct 1240210 CATTCAAAAGGAATCCACTCTTCACTTGGTCCTGAGATTAAGAGGTGG 1240163
Score = 86.0 bits (94), Expect = 5e-12
Identities = 161/234 (69%), Gaps = 2/234 (1%)
Strand=Plus/Minus
Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345
|||||||| || ||||| || | || || || || |||||| |||| ||||||
Sbjct 1239933 ATGCAAATCTTCGTCAAGACCTTAACCGGCAAGACTATTACCCTCGAGGTGGAGTCATCA 1239874
Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404
||||| ||| |||| || || || ||| || || ||||| | || ||||||
Sbjct 1239873 GACACCATTG-ACAACGTCAAGTCTAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCA 1239815
Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464
|||| | | || | ||| || || ||||| ||||| | || ||| | | || |||||
Sbjct 1239814 GCAACGTTTAATCTTTGCAGGTAAGCAATTGGAAGACGGCAGAACTCTTTCTGACTATAA 1239755
Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAAAACC 115518
||||||||| || || ||| | || | || || |||||| | || || ||||
Sbjct 1239754 CATTCAAAAGGAATCCACTCTTCACTTAGTTTTAAGATTGAGGGGTGGTGAACC 1239701
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 425343942977320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |