Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F001708105.1_202016-08-12]
11 sequences; 9,597,535 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq3 118 9e-22
seq2 114 1e-20
>seq3
Length=1828518
Score = 118 bits (130), Expect = 9e-22
Identities = 165/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
||||||||| || |||||||| | |||||||| | ||||| | || |||||||| ||
Sbjct 868735 AATGCAAATTTTCGTAAAGACCCTTACCGGTAAGACTATCACCTTGGAGGTGGAGTCTTC 868794
Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
|||||||| || | ||| | || | ||| ||||| || || ||||| |||||||
Sbjct 868795 CGACACTATTGACAACGTCAAGTCCAAGATTCAG-GACAAGGAGGGAATTCCTCCTGACC 868853
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
||||||| | || ||||| || || ||||| || |||| | | ||| || || ||||
Sbjct 868854 AACAGCGTCTGATCTTTGCTGGTAAGCAATTGGAGGATGGTAGAACTTTGTCTGACTACA 868913
Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
| || ||||| || || || | || || || || || | ||||| ||
Sbjct 868914 ACATCCAAAAGGAGTCTACCTTGCACTTGGTCCTTAGATTGAGAGGTGG 868962
>seq2
Length=2687137
Score = 114 bits (126), Expect = 1e-20
Identities = 148/202 (73%), Gaps = 2/202 (1%)
Strand=Plus/Minus
Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054
|| |||||| || || || ||||| || |||||||| |||| || | ||||| |||||
Sbjct 1170124 AAAAATGCAGATTTTCGTCAAGACCTTAACCGGTAAGACCATTACCTTGGAAGTCGAGTC 1170065
Query 25055 GTCTGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113
|| ||||| ||||| | ||| | || | ||| ||||| ||||| ||||| ||||
Sbjct 1170064 CTCCGACACCATCGACAACGTCAAGTCCAAGATTCAA-GACAAGGAAGGAATTCCTCCTG 1170006
Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173
||||||| || | |||||||| || || ||||| ||||| | | | ||| || ||| |
Sbjct 1170005 ACCAACAACGTTTGATTTTTGCTGGTAAGCAATTGGAAGACGGTAGAACTCTGTCCGACT 1169946
Query 25174 ACAATATTCAAAAAGAATCCAC 25195
|||| || || || || || ||
Sbjct 1169945 ACAACATCCAGAAGGAGTCTAC 1169924
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433327941906965
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |