Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F001708105.1_202016-08-12]
11 sequences; 9,597,535 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq2 206 3e-48
>seq2
Length=2687137
Score = 206 bits (228), Expect = 3e-48
Identities = 406/596 (68%), Gaps = 7/596 (1%)
Strand=Plus/Plus
Query 93089 AAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTT 93148
||||| ||||||||||| ||||| ||||| |||| | || | ||||||| ||| ||
Sbjct 443004 AAGCAAGCAAAGTCGGTGTGTAATCCTTCATCTCTGCAAATAAGCTCATTGGAGAAGGTC 443063
Query 93149 AAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaa 93208
|||||||| | || |||| || || | ||| || || ||||| ||| || |||||
Sbjct 443064 AAACCTGGCATAAGACCTCTCTTTTTCAACCAGAAGATAGAAGCGAAAGAGCCCGAAAAG 443123
Query 93209 aaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTG 93268
|| |||||||| || || || || || || | |||||| || || || | | |
Sbjct 443124 AAGATACCTTCAACAGCAGCGAAGGCAACCAAACGTTCAGCGAACAAAGCATCGTCATCG 443183
Query 93269 CTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCG 93328
|||||| | | ||||| || || |||| || ||||| || | || ||||| ||
Sbjct 443184 GCAATCCATCTCATGGCCCAGTCAGCCTTTTCTTTGATACATGGAATGGTCTCGATGGCA 443243
Query 93329 TTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATAC 93388
|| || | | | || || | | |||| ||||| ||||| || |||| || ||
Sbjct 443244 TTGAACAAGAATTCGGATTCTTTTGGATCTTTGATGTAAGTATCAATCAACAATGAGTAA 443303
Query 93389 ATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTG 93448
|||| || |||| |||||||| ||||| || ||||| |||||| | ||||| |
Sbjct 443304 GTTTCGGAGTGGATGTTCTCCATCATGATTTGAAAACCGTAAAAACATTTTGCTTCGGGA 443363
Query 93449 ATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCT 93508
| || || || || | || || | |||||||||||| |||||||| || ||
Sbjct 443364 AGTTGAACCTCAGCGCTGAAGTTTTCCACCAAATTTTCATTGACAATACCATCAGAGGCA 443423
Query 93509 GCaaaaaaaGCCAATATATGCT--TTATAAAATGTTTCTCATCATCTT---TAAGCTTAT 93563
|| ||||||| ||| | | || ||||||| ||||||| || | || | ||||
Sbjct 443424 GC-AAAAAAGGCAAGA-ACTCTAGAGATAAAATACTTCTCATTGTCGTTCATACGATTAT 443481
Query 93564 CCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTG 93623
||| || | ||| ||| | || | ||| ||| |||||||||| || ||||| |
Sbjct 443482 TCCAGTCATGCAAATCCTTTCCCAAGTCTATTTCCTCGGCAGTCCAAAAGGAAGCTTCGG 443541
Query 93624 CTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGA 93679
| | ||||||||| | ||| ||||| ||||||| | || || | || ||||||
Sbjct 443542 CCTGTTTGTACATTTGCCAGATGTCGTGATATTTCAAAGGGAAGAGAACGAAACGA 443597
Score = 84.2 bits (92), Expect = 2e-11
Identities = 81/100 (81%), Gaps = 7/100 (7%)
Strand=Plus/Minus
Query 126272 TTGGCCGAGT-GGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAG-CGTGGGTT 126329
|||||||||| |||||||||||||||||| | | |||||| | ||| |||| ||||||||
Sbjct 2016653 TTGGCCGAGTTGGTCTAAGGCGCCAGATTAAGGTTCTGGT-CTCTCCGGAGGCGTGGGTT 2016595
Query 126330 CGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369
||||||||||| || || |||| || ||||||||
Sbjct 2016594 CGAACCCCACAGTTGTCATTATATTTTT----TTTTTGTT 2016559
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556860723431640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |