Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F001708105.1_202016-08-12] 11 sequences; 9,597,535 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq2 206 3e-48 >seq2 Length=2687137 Score = 206 bits (228), Expect = 3e-48 Identities = 406/596 (68%), Gaps = 7/596 (1%) Strand=Plus/Plus Query 93089 AAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTT 93148 ||||| ||||||||||| ||||| ||||| |||| | || | ||||||| ||| || Sbjct 443004 AAGCAAGCAAAGTCGGTGTGTAATCCTTCATCTCTGCAAATAAGCTCATTGGAGAAGGTC 443063 Query 93149 AAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaa 93208 |||||||| | || |||| || || | ||| || || ||||| ||| || ||||| Sbjct 443064 AAACCTGGCATAAGACCTCTCTTTTTCAACCAGAAGATAGAAGCGAAAGAGCCCGAAAAG 443123 Query 93209 aaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTG 93268 || |||||||| || || || || || || | |||||| || || || | | | Sbjct 443124 AAGATACCTTCAACAGCAGCGAAGGCAACCAAACGTTCAGCGAACAAAGCATCGTCATCG 443183 Query 93269 CTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCG 93328 |||||| | | ||||| || || |||| || ||||| || | || ||||| || Sbjct 443184 GCAATCCATCTCATGGCCCAGTCAGCCTTTTCTTTGATACATGGAATGGTCTCGATGGCA 443243 Query 93329 TTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATAC 93388 || || | | | || || | | |||| ||||| ||||| || |||| || || Sbjct 443244 TTGAACAAGAATTCGGATTCTTTTGGATCTTTGATGTAAGTATCAATCAACAATGAGTAA 443303 Query 93389 ATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTG 93448 |||| || |||| |||||||| ||||| || ||||| |||||| | ||||| | Sbjct 443304 GTTTCGGAGTGGATGTTCTCCATCATGATTTGAAAACCGTAAAAACATTTTGCTTCGGGA 443363 Query 93449 ATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCT 93508 | || || || || | || || | |||||||||||| |||||||| || || Sbjct 443364 AGTTGAACCTCAGCGCTGAAGTTTTCCACCAAATTTTCATTGACAATACCATCAGAGGCA 443423 Query 93509 GCaaaaaaaGCCAATATATGCT--TTATAAAATGTTTCTCATCATCTT---TAAGCTTAT 93563 || ||||||| ||| | | || ||||||| ||||||| || | || | |||| Sbjct 443424 GC-AAAAAAGGCAAGA-ACTCTAGAGATAAAATACTTCTCATTGTCGTTCATACGATTAT 443481 Query 93564 CCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTG 93623 ||| || | ||| ||| | || | ||| ||| |||||||||| || ||||| | Sbjct 443482 TCCAGTCATGCAAATCCTTTCCCAAGTCTATTTCCTCGGCAGTCCAAAAGGAAGCTTCGG 443541 Query 93624 CTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGA 93679 | | ||||||||| | ||| ||||| ||||||| | || || | || |||||| Sbjct 443542 CCTGTTTGTACATTTGCCAGATGTCGTGATATTTCAAAGGGAAGAGAACGAAACGA 443597 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/100 (81%), Gaps = 7/100 (7%) Strand=Plus/Minus Query 126272 TTGGCCGAGT-GGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAG-CGTGGGTT 126329 |||||||||| |||||||||||||||||| | | |||||| | ||| |||| |||||||| Sbjct 2016653 TTGGCCGAGTTGGTCTAAGGCGCCAGATTAAGGTTCTGGT-CTCTCCGGAGGCGTGGGTT 2016595 Query 126330 CGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369 ||||||||||| || || |||| || |||||||| Sbjct 2016594 CGAACCCCACAGTTGTCATTATATTTTT----TTTTTGTT 2016559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556860723431640