Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F001708105.1_202016-08-12] 11 sequences; 9,597,535 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq2 181 2e-40 seq4 156 8e-33 seq3 154 3e-32 >seq2 Length=2687137 Score = 181 bits (200), Expect = 2e-40 Identities = 166/210 (79%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| | || ||||| || |||||||| || ||||| || || || || ||||| Sbjct 1169912 ACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCTACCGTCTTCC 1169971 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 || ||||| || || || || | | ||||||||| || ||||| ||||||||||||||| Sbjct 1169972 AATTGCTTACCAGCAAAAATCAAACGTTGTTGGTCAGGAGGAATTCCTTCCTTGTCTTGA 1170031 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| | ||||||| ||||||||||| | || || ||||||||||| ||||| || Sbjct 1170032 ATCTTGGACTTGACGTTGTCGATGGTGTCGGAGGACTCGACTTCCAAGGTAATGGTCTTA 1170091 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || || | |||||||||||| ||||||||| Sbjct 1170092 CCGGTTAAGGTCTTGACGAAAATCTGCATT 1170121 >seq4 Length=1577441 Score = 156 bits (172), Expect = 8e-33 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || ||||| || ||||| |||||||| || || || || || || ||||| Sbjct 1239953 ACCAAGTGAAGAGTGGATTCCTTTTGAATGTTATAGTCAGAAAGAGTTCTGCCGTCTTCC 1240012 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 || ||||| || || || || | | ||| || || || ||||| ||||||||||| ||| Sbjct 1240013 AATTGCTTACCTGCAAAGATTAAACGTTGCTGATCAGGAGGAATACCTTCCTTGTCCTGA 1240072 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| | ||||||| || |||||||||| ||| || || || | ||| || || || Sbjct 1240073 ATCTTAGACTTGACGTTGTCAATGGTGTCTGATGACTCCACCTCGAGGGTAATAGTCTTG 1240132 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || | |||||||||||| || ||||| Sbjct 1240133 CCGGTTAAGGTCTTGACGAAGATTTGCAT 1240161 Score = 156 bits (172), Expect = 8e-33 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || ||||| || ||||| |||||||| || || || || || || ||||| Sbjct 1240181 ACCAAGTGAAGAGTGGATTCCTTTTGAATGTTATAGTCAGAAAGAGTTCTGCCGTCTTCC 1240240 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 || ||||| || || || || | | ||| || || || ||||| ||||||||||| ||| Sbjct 1240241 AATTGCTTACCTGCAAAGATTAAACGTTGCTGATCAGGAGGAATACCTTCCTTGTCCTGA 1240300 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| | ||||||| || |||||||||| ||| || || || | ||| || || || Sbjct 1240301 ATCTTAGACTTGACGTTGTCAATGGTGTCTGATGACTCCACCTCGAGGGTAATAGTCTTG 1240360 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || | |||||||||||| || ||||| Sbjct 1240361 CCGGTTAAGGTCTTGACGAAGATTTGCAT 1240389 Score = 154 bits (170), Expect = 3e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || ||||| || ||||| |||||||| || || || || || || ||||| Sbjct 1240409 ACCAAGTGAAGAGTGGATTCCTTTTGAATGTTATAGTCAGAAAGAGTTCTGCCGTCTTCC 1240468 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 || ||||| || || || || | | ||| || || || ||||| ||||||||||| ||| Sbjct 1240469 AATTGCTTACCTGCAAAGATTAAACGTTGCTGATCAGGAGGAATACCTTCCTTGTCCTGA 1240528 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| | ||||||| || |||||||||| ||| || || || | ||||| || || Sbjct 1240529 ATCTTAGACTTGACGTTGTCAATGGTGTCTGATGACTCCACCTCAAGAGTGATAGTCTTA 1240588 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || || ||||| || || || ||||||||| Sbjct 1240589 CCTGTTAGGGTTTTCACAAAAATCTGCATT 1240618 Score = 152 bits (168), Expect = 9e-32 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 68250 AATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCT 68309 || || ||||| || ||||| || ||||| |||||||| || || || || || || ||| Sbjct 1239722 AAAACTAAGTGAAGAGTGGATTCCTTTTGAATGTTATAGTCAGAAAGAGTTCTGCCGTCT 1239781 Query 68310 TCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCT 68369 || || ||||| || || || || | | ||| || || || ||||| ||||||||||| Sbjct 1239782 TCCAATTGCTTACCTGCAAAGATTAAACGTTGCTGATCAGGAGGAATACCTTCCTTGTCC 1239841 Query 68370 TGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTT 68429 |||||||| | ||||||| || |||||||||| ||| || || || | ||| || || Sbjct 1239842 TGAATCTTAGACTTGACGTTGTCAATGGTGTCTGATGACTCCACCTCGAGGGTAATAGTC 1239901 Query 68430 TTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || | |||||||||||| || ||||| Sbjct 1239902 TTGCCGGTTAAGGTCTTGACGAAGATTTGCAT 1239933 >seq3 Length=1828518 Score = 154 bits (170), Expect = 3e-32 Identities = 162/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| | || ||||| ||||||||||| || || || | || || ||||| || Sbjct 868944 ACCAAGTGCAAGGTAGACTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTACCATCCTCC 868885 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 || ||||| || || || || || | |||||||| || ||||| || |||||||| ||| Sbjct 868884 AATTGCTTACCAGCAAAGATCAGACGCTGTTGGTCAGGAGGAATTCCCTCCTTGTCCTGA 868825 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| | ||||||| || || ||||| | || || || ||||||||||| || || Sbjct 868824 ATCTTGGACTTGACGTTGTCAATAGTGTCGGAAGACTCCACCTCCAAGGTGATAGTCTTA 868765 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 || || |||||||| ||||| || |||||| || Sbjct 868764 CCGGTAAGGGTCTTTACGAAAATTTGCATTTTG 868732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921622273276920