Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F001708105.1_202016-08-12]
11 sequences; 9,597,535 total letters
Query= NC_009011.2
Length=131331
Score E
Sequences producing significant alignments: (Bits) Value
seq2 118 9e-22
seq3 116 3e-21
seq4 95.1 1e-14
>seq2
Length=2687137
Score = 118 bits (130), Expect = 9e-22
Identities = 164/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| || | | ||||| ||| | || | ||||| || || || |||||||| |||
Sbjct 1169891 ATACCACCTCTCAATCTCAGAACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCG 1169950
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|| ||| | | ||||| | ||| |||||||| | || | ||| |||||||| |||
Sbjct 1169951 GACAGAGTTCTACCGTCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGTTGGTCAGGA 1170010
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
||||| ||||| ||||| |||||| || | | || | |||||||| ||| |||
Sbjct 1170011 GGAATTCCTTCCTTGTCTTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAGGACTCG 1170070
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| |||| ||| | || || ||||| | || || || |||||||||||
Sbjct 1170071 ACTTCCAAGGTAATGGTCTTACCGGTTAAGGTCTTGACGAAAATCTGCAT 1170120
>seq3
Length=1828518
Score = 116 bits (128), Expect = 3e-21
Identities = 144/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245
||||| || ||||| |||||||| || || ||| | | ||| || | ||| ||||||
Sbjct 868932 GTAGACTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTACCATCCTCCAATTGCTTACCA 868873
Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305
|| |||| |||||||||||||| |||||||| || || ||||| |||||| ||
Sbjct 868872 GCAAAGATCAGACGCTGTTGGTCAGGAGGAATTCCCTCCTTGTCCTGAATCTTGGACTTG 868813
Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365
| | |||| ||||||| || || || |||| ||| | || || ||||| || ||
Sbjct 868812 ACGTTGTCAATAGTGTCGGAAGACTCCACCTCCAAGGTGATAGTCTTACCGGTAAGGGTC 868753
Query 114366 TTTACAAAAATCTGCAT 114382
||||| ||||| |||||
Sbjct 868752 TTTACGAAAATTTGCAT 868736
>seq4
Length=1577441
Score = 95.1 bits (104), Expect = 1e-14
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| || | || ||||| || || || | || ||||| ||||||||||| || ||
Sbjct 1240388 ATACCACCTCTTAATCTCAGGACCAAGTGAAGAGTGGATTCCTTTTGAATGTTATAGTCA 1240447
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| ||| | ||||| | ||| ||||| || |||| | ||| || || || |||
Sbjct 1240448 GAAAGAGTTCTGCCGTCTTCCAATTGCTTACCTGCAAAGATTAAACGTTGCTGATCAGGA 1240507
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
||||| ||||| ||||| |||||| || | | |||| |||||| | || ||
Sbjct 1240508 GGAATACCTTCCTTGTCCTGAATCTTAGACTTGACGTTGTCAATGGTGTCTGATGACTCC 1240567
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| || | || | || || || || || ||||| ||||||||||||||
Sbjct 1240568 ACCTCAAGAGTGATAGTCTTACCTGTTAGGGTTTTCACAAAAATCTGCAT 1240617
Score = 87.8 bits (96), Expect = 2e-12
Identities = 149/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 114167 TCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGA 114226
||| |||||||| || | || ||||| ||||||||||| || || | ||| |
Sbjct 1239718 TCTTAAAACTAAGTGAAGAGTGGATTCCTTTTGAATGTTATAGTCAGAAAGAGTTCTGCC 1239777
Query 114227 ATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTT 114286
||||| | ||| ||||| || |||| | ||| || || || |||||||| ||||| ||
Sbjct 1239778 GTCTTCCAATTGCTTACCTGCAAAGATTAAACGTTGCTGATCAGGAGGAATACCTTCCTT 1239837
Query 114287 GTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCAC 114346
||| |||||| || | | |||| |||||| | || || || || | ||| |
Sbjct 1239838 GTCCTGAATCTTAGACTTGACGTTGTCAATGGTGTCTGATGACTCCACCTCGAGGGTAAT 1239897
Query 114347 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| |||||||| | || || || || || |||||
Sbjct 1239898 AGTCTTGCCGGTTAAGGTCTTGACGAAGATTTGCAT 1239933
Score = 86.0 bits (94), Expect = 5e-12
Identities = 157/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| || | || ||||| || || || | || ||||| ||||||||||| || ||
Sbjct 1239932 ATACCACCTCTTAATCTCAGGACCAAGTGAAGAGTGGATTCCTTTTGAATGTTATAGTCA 1239991
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| ||| | ||||| | ||| ||||| || |||| | ||| || || || |||
Sbjct 1239992 GAAAGAGTTCTGCCGTCTTCCAATTGCTTACCTGCAAAGATTAAACGTTGCTGATCAGGA 1240051
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
||||| ||||| ||||| |||||| || | | |||| |||||| | || ||
Sbjct 1240052 GGAATACCTTCCTTGTCCTGAATCTTAGACTTGACGTTGTCAATGGTGTCTGATGACTCC 1240111
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| || | ||| | || |||||||| | || || || || || |||||
Sbjct 1240112 ACCTCGAGGGTAATAGTCTTGCCGGTTAAGGTCTTGACGAAGATTTGCAT 1240161
Score = 86.0 bits (94), Expect = 5e-12
Identities = 157/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| || | || ||||| || || || | || ||||| ||||||||||| || ||
Sbjct 1240160 ATACCACCTCTTAATCTCAGGACCAAGTGAAGAGTGGATTCCTTTTGAATGTTATAGTCA 1240219
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| ||| | ||||| | ||| ||||| || |||| | ||| || || || |||
Sbjct 1240220 GAAAGAGTTCTGCCGTCTTCCAATTGCTTACCTGCAAAGATTAAACGTTGCTGATCAGGA 1240279
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
||||| ||||| ||||| |||||| || | | |||| |||||| | || ||
Sbjct 1240280 GGAATACCTTCCTTGTCCTGAATCTTAGACTTGACGTTGTCAATGGTGTCTGATGACTCC 1240339
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| || | ||| | || |||||||| | || || || || || |||||
Sbjct 1240340 ACCTCGAGGGTAATAGTCTTGCCGGTTAAGGTCTTGACGAAGATTTGCAT 1240389
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 420134343675732
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |