Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F001708105.1_202016-08-12] 11 sequences; 9,597,535 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq2 131 4e-25 seq3 84.2 5e-11 >seq2 Length=2687137 Score = 131 bits (144), Expect = 4e-25 Identities = 182/255 (71%), Gaps = 0/255 (0%) Strand=Plus/Minus Query 334100 AATGAAGTCAATGATAGCCATGTTAGAATCGGACCCGTCGAGATCGTGTTCCACGTAAGC 334159 ||||||||||| | | ||| | || || || |||| ||||| || ||||| | Sbjct 122127 AATGAAGTCAACAGTGGAGGTGTCGGCTTCAGAACCATCGATGTCGTGCTCGACGTAGAC 122068 Query 334160 AGTTTTCAAAACATCCGCAGAGGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCAT 334219 |||| | | ||||| ||| ||||| ||||||| |||||||| ||||||| | ||| Sbjct 122067 AGTTCTACATTCATCCTGAGATGGGAAGCCTTCAACTTGACCGTTGGCAATAGCTCTCAT 122008 Query 334220 CAGAGTTGATTTACCCGCCCCGTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAG 334279 || || || ||||| || ||||| || ||||||||||| || || | | | |||||| Sbjct 122007 CAAGGTAGACTTACCAGCACCGTTGGGACCACACAGACCATAACGTCTAGCTCTCTTCAG 121948 Query 334280 ATTGAACCGCGTATTGTTCAGAAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATC 334339 | ||| | || |||||||| | || || |||| || ||||| || || ||||| | Sbjct 121947 ACGGAATTGAGTCTTGTTCAGCAAGATCTTAGCACCGTAAGCCAGGGAGAACTCACAGTT 121888 Query 334340 ACACAGATCCTCACC 334354 ||| || || ||||| Sbjct 121887 ACATAGGTCTTCACC 121873 >seq3 Length=1828518 Score = 84.2 bits (92), Expect = 5e-11 Identities = 114/158 (72%), Gaps = 12/158 (8%) Strand=Plus/Plus Query 334182 GGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCCG 334241 ||||| ||||| || ||||| || |||||| | ||||||||| |||||||| || ||| Sbjct 858479 GGGAAACCTTCTAGTTGACCATTAGCAATAGATCTCATCAGAGTAGATTTACCTGCACCG 858538 Query 334242 TTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTGAACCGC------GTATTG 334295 || | |||||||||||||| | || || |||||| |||| | || ||| Sbjct 858539 TTACGTCCACACAGACCGTATCTGT---GACCCTTCAG---CAACCTCAAGGTTGTCTTG 858592 Query 334296 TTCAGAAGAATTTTTCCACCATATGCCAGAGAAAATTC 334333 || || || ||| | | |||||| |||| ||| || || Sbjct 858593 TTAAGCAGCATTCTACTACCATAAGCCAAAGAGAAATC 858630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102879844562850