Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F001708105.1_202016-08-12] 11 sequences; 9,597,535 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq3 111 2e-19 seq4 105 7e-18 seq2 93.3 4e-14 >seq3 Length=1828518 Score = 111 bits (122), Expect = 2e-19 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||| | | || || || | | | ||||||||||| ||||||||||| | Sbjct 868962 CCACCTCTCAATCTAAGGACCAAGTGCAAGGTAGACTCCTTTTGGATGTTGTAGTCAGAC 868903 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | ||||| | ||| ||||| | | |||| |||||||||||||| ||||| Sbjct 868902 AAAGTTCTACCATCCTCCAATTGCTTACCAGCAAAGATCAGACGCTGTTGGTCAGGAGGA 868843 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| ||| | || | || | ||| || | ||||||| ||||||| Sbjct 868842 ATTCCCTCCTTGTC-CTGAATCTTGGACTTGACGTTG-TCAATAGTGTCGGAAGACTCCA 868785 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || ||||| || || || ||||| ||||| ||||| Sbjct 868784 CCTCCAAGGTGATAGTCTTACCGGTAAGGGTCTTTACGAAAATTTGCAT 868736 >seq4 Length=1577441 Score = 105 bits (116), Expect = 7e-18 Identities = 143/196 (73%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || |||||||||||||| ||||| | ||| | ||| || | ||| ||||| | | Sbjct 1240424 GATTCCTTTTGAATGTTATAGTCAGAAAGAGTTCTGCCGTCTTCCAATTGCTTACCTGCA 1240483 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||||| ||| || || || ||||| |||||||| ||||| ||| | || | || | Sbjct 1240484 AAGATTAAACGTTGCTGATCAGGAGGAATACCTTCCTTGTC-CTGAATCTTAGACTTGAC 1240542 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | |||||| | ||||||||||| | || | || ||||| || || |||| Sbjct 1240543 GTTG-TCAATGGTGTCTGATGACTCCACCTCAAGAGTGATAGTCTTACCTGTTAGGGTTT 1240601 Query 138599 TTACAAAAATCTGCAT 138614 | |||||||||||||| Sbjct 1240602 TCACAAAAATCTGCAT 1240617 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 138403 AAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCC 138462 |||||||| || | | || |||||||||||||| ||||| | ||| | ||| Sbjct 1239722 AAAACTAAGTGAAGAGTGGATTCCTTTTGAATGTTATAGTCAGAAAGAGTTCTGCCGTCT 1239781 Query 138463 TCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCG 138522 || | ||| ||||| | | |||||| ||| || || || ||||| |||||||| ||||| Sbjct 1239782 TCCAATTGCTTACCTGCAAAGATTAAACGTTGCTGATCAGGAGGAATACCTTCCTTGTC- 1239840 Query 138523 GTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCG 138580 ||| | || | || | ||| || | |||||| | ||||||||||||| || | | Sbjct 1239841 CTGAATCTTAGACTTGACGTTG-TCAATGGTGTCTGATGACTCCACCTCGAGGGTAATAG 1239899 Query 138581 TTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || || || | || || || || || ||||| Sbjct 1239900 TCTTGCCGGTTAAGGTCTTGACGAAGATTTGCAT 1239933 Score = 82.4 bits (90), Expect = 8e-11 Identities = 138/196 (70%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || |||||||||||||| ||||| | ||| | ||| || | ||| ||||| | | Sbjct 1239968 GATTCCTTTTGAATGTTATAGTCAGAAAGAGTTCTGCCGTCTTCCAATTGCTTACCTGCA 1240027 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||||| ||| || || || ||||| |||||||| ||||| ||| | || | || | Sbjct 1240028 AAGATTAAACGTTGCTGATCAGGAGGAATACCTTCCTTGTC-CTGAATCTTAGACTTGAC 1240086 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | |||||| | ||||||||||||| || | || || || || | || | Sbjct 1240087 GTTG-TCAATGGTGTCTGATGACTCCACCTCGAGGGTAATAGTCTTGCCGGTTAAGGTCT 1240145 Query 138599 TTACAAAAATCTGCAT 138614 | || || || ||||| Sbjct 1240146 TGACGAAGATTTGCAT 1240161 Score = 82.4 bits (90), Expect = 8e-11 Identities = 138/196 (70%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || |||||||||||||| ||||| | ||| | ||| || | ||| ||||| | | Sbjct 1240196 GATTCCTTTTGAATGTTATAGTCAGAAAGAGTTCTGCCGTCTTCCAATTGCTTACCTGCA 1240255 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||||| ||| || || || ||||| |||||||| ||||| ||| | || | || | Sbjct 1240256 AAGATTAAACGTTGCTGATCAGGAGGAATACCTTCCTTGTC-CTGAATCTTAGACTTGAC 1240314 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | |||||| | ||||||||||||| || | || || || || | || | Sbjct 1240315 GTTG-TCAATGGTGTCTGATGACTCCACCTCGAGGGTAATAGTCTTGCCGGTTAAGGTCT 1240373 Query 138599 TTACAAAAATCTGCAT 138614 | || || || ||||| Sbjct 1240374 TGACGAAGATTTGCAT 1240389 >seq2 Length=2687137 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||| | || ||| | || | | |||||||| || |||||||||||| | Sbjct 1169894 CCACCTCTCAATCTCAGAACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCGGAC 1169953 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | ||| || | ||| ||||| | | | || | ||| |||||||| ||||| Sbjct 1169954 AGAGTTCTACCGTCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGTTGGTCAGGAGGA 1170013 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||| ||||| ||| | || | || | ||| || | |||||||| ||||| | Sbjct 1170014 ATTCCTTCCTTGTC-TTGAATCTTGGACTTGACGTTG-TCGATGGTGTCGGAGGACTCGA 1170071 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || | || | || ||||| || | || || || ||||||||||| Sbjct 1170072 CTTCCAAGGTAATGGTCTTACCGGTTAAGGTCTTGACGAAAATCTGCAT 1170120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262331763920