Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F001708105.1_202016-08-12]
11 sequences; 9,597,535 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq3 111 2e-19
seq4 105 7e-18
seq2 93.3 4e-14
>seq3
Length=1828518
Score = 111 bits (122), Expect = 2e-19
Identities = 164/229 (72%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| |||| ||| | | || || || | | | ||||||||||| ||||||||||| |
Sbjct 868962 CCACCTCTCAATCTAAGGACCAAGTGCAAGGTAGACTCCTTTTGGATGTTGTAGTCAGAC 868903
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||| | ||||| | ||| ||||| | | |||| |||||||||||||| |||||
Sbjct 868902 AAAGTTCTACCATCCTCCAATTGCTTACCAGCAAAGATCAGACGCTGTTGGTCAGGAGGA 868843
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565
|| || || ||||| ||| | || | || | ||| || | ||||||| |||||||
Sbjct 868842 ATTCCCTCCTTGTC-CTGAATCTTGGACTTGACGTTG-TCAATAGTGTCGGAAGACTCCA 868785
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|||| | || | || ||||| || || || ||||| ||||| |||||
Sbjct 868784 CCTCCAAGGTGATAGTCTTACCGGTAAGGGTCTTTACGAAAATTTGCAT 868736
>seq4
Length=1577441
Score = 105 bits (116), Expect = 7e-18
Identities = 143/196 (73%), Gaps = 4/196 (2%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|| |||||||||||||| ||||| | ||| | ||| || | ||| ||||| | |
Sbjct 1240424 GATTCCTTTTGAATGTTATAGTCAGAAAGAGTTCTGCCGTCTTCCAATTGCTTACCTGCA 1240483
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539
|||||| ||| || || || ||||| |||||||| ||||| ||| | || | || |
Sbjct 1240484 AAGATTAAACGTTGCTGATCAGGAGGAATACCTTCCTTGTC-CTGAATCTTAGACTTGAC 1240542
Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598
||| || | |||||| | ||||||||||| | || | || ||||| || || ||||
Sbjct 1240543 GTTG-TCAATGGTGTCTGATGACTCCACCTCAAGAGTGATAGTCTTACCTGTTAGGGTTT 1240601
Query 138599 TTACAAAAATCTGCAT 138614
| ||||||||||||||
Sbjct 1240602 TCACAAAAATCTGCAT 1240617
Score = 87.8 bits (96), Expect = 2e-12
Identities = 150/214 (70%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 138403 AAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCC 138462
|||||||| || | | || |||||||||||||| ||||| | ||| | |||
Sbjct 1239722 AAAACTAAGTGAAGAGTGGATTCCTTTTGAATGTTATAGTCAGAAAGAGTTCTGCCGTCT 1239781
Query 138463 TCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCG 138522
|| | ||| ||||| | | |||||| ||| || || || ||||| |||||||| |||||
Sbjct 1239782 TCCAATTGCTTACCTGCAAAGATTAAACGTTGCTGATCAGGAGGAATACCTTCCTTGTC- 1239840
Query 138523 GTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCG 138580
||| | || | || | ||| || | |||||| | ||||||||||||| || | |
Sbjct 1239841 CTGAATCTTAGACTTGACGTTG-TCAATGGTGTCTGATGACTCCACCTCGAGGGTAATAG 1239899
Query 138581 TTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
| || || || | || || || || || |||||
Sbjct 1239900 TCTTGCCGGTTAAGGTCTTGACGAAGATTTGCAT 1239933
Score = 82.4 bits (90), Expect = 8e-11
Identities = 138/196 (70%), Gaps = 4/196 (2%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|| |||||||||||||| ||||| | ||| | ||| || | ||| ||||| | |
Sbjct 1239968 GATTCCTTTTGAATGTTATAGTCAGAAAGAGTTCTGCCGTCTTCCAATTGCTTACCTGCA 1240027
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539
|||||| ||| || || || ||||| |||||||| ||||| ||| | || | || |
Sbjct 1240028 AAGATTAAACGTTGCTGATCAGGAGGAATACCTTCCTTGTC-CTGAATCTTAGACTTGAC 1240086
Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598
||| || | |||||| | ||||||||||||| || | || || || || | || |
Sbjct 1240087 GTTG-TCAATGGTGTCTGATGACTCCACCTCGAGGGTAATAGTCTTGCCGGTTAAGGTCT 1240145
Query 138599 TTACAAAAATCTGCAT 138614
| || || || |||||
Sbjct 1240146 TGACGAAGATTTGCAT 1240161
Score = 82.4 bits (90), Expect = 8e-11
Identities = 138/196 (70%), Gaps = 4/196 (2%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|| |||||||||||||| ||||| | ||| | ||| || | ||| ||||| | |
Sbjct 1240196 GATTCCTTTTGAATGTTATAGTCAGAAAGAGTTCTGCCGTCTTCCAATTGCTTACCTGCA 1240255
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539
|||||| ||| || || || ||||| |||||||| ||||| ||| | || | || |
Sbjct 1240256 AAGATTAAACGTTGCTGATCAGGAGGAATACCTTCCTTGTC-CTGAATCTTAGACTTGAC 1240314
Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598
||| || | |||||| | ||||||||||||| || | || || || || | || |
Sbjct 1240315 GTTG-TCAATGGTGTCTGATGACTCCACCTCGAGGGTAATAGTCTTGCCGGTTAAGGTCT 1240373
Query 138599 TTACAAAAATCTGCAT 138614
| || || || |||||
Sbjct 1240374 TGACGAAGATTTGCAT 1240389
>seq2
Length=2687137
Score = 93.3 bits (102), Expect = 4e-14
Identities = 160/229 (70%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| |||| ||| | || ||| | || | | |||||||| || |||||||||||| |
Sbjct 1169894 CCACCTCTCAATCTCAGAACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCGGAC 1169953
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||| | ||| || | ||| ||||| | | | || | ||| |||||||| |||||
Sbjct 1169954 AGAGTTCTACCGTCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGTTGGTCAGGAGGA 1170013
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565
|| ||||| ||||| ||| | || | || | ||| || | |||||||| ||||| |
Sbjct 1170014 ATTCCTTCCTTGTC-TTGAATCTTGGACTTGACGTTG-TCGATGGTGTCGGAGGACTCGA 1170071
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
| || | || | || ||||| || | || || || |||||||||||
Sbjct 1170072 CTTCCAAGGTAATGGTCTTACCGGTTAAGGTCTTGACGAAAATCTGCAT 1170120
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496262331763920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |