Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F001708105.1_202016-08-12] 11 sequences; 9,597,535 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq3 93.3 4e-14 seq1 91.5 1e-13 seq2 84.2 2e-11 >seq3 Length=1828518 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | |||| | ||||| || | |||||||| ||||| || ||||| || | Sbjct 868962 CCACCTCTCAATCTAAGGACCAAGTGCAAGGTAGACTCCTTTTGGATGTTGTAGTCAGAC 868903 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || | | ||| || | || || ||||| |||||| ||||| || || ||||| Sbjct 868902 AAAGTTCTACCATCCTCCAATTGCTTACCAGCAAAGATCAGACGCTGTTGGTCAGGAGGA 868843 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| || || ||||| |||| || | ||||| | | ||| || Sbjct 868842 ATTCCCTCCTTGTCCTGAATCTTGGACTTGACGTTG-TCAATAGTGTCGGAAGACTCCAC 868784 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || || ||||| || || ||||| ||||| ||||| Sbjct 868783 CTCCAAGGTGATAGTCTTACCGGTAAGGGTCTTTACGAAAATTTGCAT 868736 >seq1 Length=3325186 Score = 91.5 bits (100), Expect = 1e-13 Identities = 237/358 (66%), Gaps = 4/358 (1%) Strand=Plus/Minus Query 146635 GCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCGCAATACTGCACAATCTCG 146694 || ||||| ||||||||||| || ||||| || || | |||||| |||||||| Sbjct 2236188 GCAATAGAAGCCAAGTTACAGACAGCAGTTTCTTCTGGGGAAGAATACTCAACAATCTCA 2236129 Query 146695 GCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTACTAAACTTGTTGCAG 146754 || ||||| | | || |||| ||||| || || ||||| | |||||| || Sbjct 2236128 CAACAAAGGTTAGAGGATTTAATGACACCCAAGTTCTTCTGGTTGGTTTTCTTGTTACAA 2236069 Query 146755 GGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTCGACATTGGTCTCGACGATGAATCTA 146814 | ||||| || | |||| | || |||||||| | | ||||| |||| | Sbjct 2236068 GCATCCTTATACAACATGAATGGAGTACCGGTTTCTGTCTGTGCCTCGAGGATG--GCGT 2236011 Query 146815 AACAAATC-TCTGGCCTTTACTTGTCTTTCGTACA-GTTTATTCTTTTCGTATTTCTCGT 146872 | |||| | | ||| |||| | || | || | || | | |||||||||| | |||| Sbjct 2236010 ACCAAAGCTTTTGGGCTTTGATGGTTTGTCTTCCACGACCTTCCTTTTCGTATCTTTCGT 2235951 Query 146873 ACAATATTTCAAAACTAGAACCGTACTCGTCGAGGAGGCCGGGATACTTTTTGGGACAGA 146932 ||| | |||||| | ||||| ||||| ||||| ||| || | ||| ||| Sbjct 2235950 ACAGTTCTTCAAATTCATCGCCGTAGACGTCGGCAAGGCCAGGAGCCTCACTTGGAGAGA 2235891 Query 146933 ACAGCGACCATTCTTTATTCTCCTTCACGCGTTCCATAAACAAATCGGGAATCCAAAG 146990 |||| | |||||| ||||| | || | || ||| |||| ||| || ||||| || Sbjct 2235890 ACAGGGTCCATTCGCCATTCTGTTCGACCCTTTTCATGAACAGATCAGGGATCCATAG 2235833 >seq2 Length=2687137 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | |||| || |||| || | |||||||| || || || ||||| ||| | Sbjct 1169894 CCACCTCTCAATCTCAGAACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCGGAC 1169953 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || | | || || | || || ||||| | ||||| || || || || ||||| Sbjct 1169954 AGAGTTCTACCGTCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGTTGGTCAGGAGGA 1170013 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || |||||||| || || ||||| ||||| ||| |||||| | |||||| Sbjct 1170014 ATTCCTTCCTTGTCTTGAATCTTGGACTTGACGTTGT-CGATGGTGTCGGAGGACTCGAC 1170072 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | ||| | || || ||||| | || || || ||||||||||| Sbjct 1170073 TTCCAAGGTAATGGTCTTACCGGTTAAGGTCTTGACGAAAATCTGCAT 1170120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500734618640