Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F001708105.1_202016-08-12]
11 sequences; 9,597,535 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq3 93.3 4e-14
seq1 91.5 1e-13
seq2 84.2 2e-11
>seq3
Length=1828518
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| | |||| | ||||| || | |||||||| ||||| || ||||| || |
Sbjct 868962 CCACCTCTCAATCTAAGGACCAAGTGCAAGGTAGACTCCTTTTGGATGTTGTAGTCAGAC 868903
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || | | ||| || | || || ||||| |||||| ||||| || || |||||
Sbjct 868902 AAAGTTCTACCATCCTCCAATTGCTTACCAGCAAAGATCAGACGCTGTTGGTCAGGAGGA 868843
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|| |||||||||||| || || ||||| |||| || | ||||| | | ||| ||
Sbjct 868842 ATTCCCTCCTTGTCCTGAATCTTGGACTTGACGTTG-TCAATAGTGTCGGAAGACTCCAC 868784
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| | ||| | || || ||||| || || ||||| ||||| |||||
Sbjct 868783 CTCCAAGGTGATAGTCTTACCGGTAAGGGTCTTTACGAAAATTTGCAT 868736
>seq1
Length=3325186
Score = 91.5 bits (100), Expect = 1e-13
Identities = 237/358 (66%), Gaps = 4/358 (1%)
Strand=Plus/Minus
Query 146635 GCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCGCAATACTGCACAATCTCG 146694
|| ||||| ||||||||||| || ||||| || || | |||||| ||||||||
Sbjct 2236188 GCAATAGAAGCCAAGTTACAGACAGCAGTTTCTTCTGGGGAAGAATACTCAACAATCTCA 2236129
Query 146695 GCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTACTAAACTTGTTGCAG 146754
|| ||||| | | || |||| ||||| || || ||||| | |||||| ||
Sbjct 2236128 CAACAAAGGTTAGAGGATTTAATGACACCCAAGTTCTTCTGGTTGGTTTTCTTGTTACAA 2236069
Query 146755 GGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTCGACATTGGTCTCGACGATGAATCTA 146814
| ||||| || | |||| | || |||||||| | | ||||| |||| |
Sbjct 2236068 GCATCCTTATACAACATGAATGGAGTACCGGTTTCTGTCTGTGCCTCGAGGATG--GCGT 2236011
Query 146815 AACAAATC-TCTGGCCTTTACTTGTCTTTCGTACA-GTTTATTCTTTTCGTATTTCTCGT 146872
| |||| | | ||| |||| | || | || | || | | |||||||||| | ||||
Sbjct 2236010 ACCAAAGCTTTTGGGCTTTGATGGTTTGTCTTCCACGACCTTCCTTTTCGTATCTTTCGT 2235951
Query 146873 ACAATATTTCAAAACTAGAACCGTACTCGTCGAGGAGGCCGGGATACTTTTTGGGACAGA 146932
||| | |||||| | ||||| ||||| ||||| ||| || | ||| |||
Sbjct 2235950 ACAGTTCTTCAAATTCATCGCCGTAGACGTCGGCAAGGCCAGGAGCCTCACTTGGAGAGA 2235891
Query 146933 ACAGCGACCATTCTTTATTCTCCTTCACGCGTTCCATAAACAAATCGGGAATCCAAAG 146990
|||| | |||||| ||||| | || | || ||| |||| ||| || ||||| ||
Sbjct 2235890 ACAGGGTCCATTCGCCATTCTGTTCGACCCTTTTCATGAACAGATCAGGGATCCATAG 2235833
>seq2
Length=2687137
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| | |||| || |||| || | |||||||| || || || ||||| ||| |
Sbjct 1169894 CCACCTCTCAATCTCAGAACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCGGAC 1169953
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || | | || || | || || ||||| | ||||| || || || || |||||
Sbjct 1169954 AGAGTTCTACCGTCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGTTGGTCAGGAGGA 1170013
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|| || |||||||| || || ||||| ||||| ||| |||||| | ||||||
Sbjct 1170014 ATTCCTTCCTTGTCTTGAATCTTGGACTTGACGTTGT-CGATGGTGTCGGAGGACTCGAC 1170072
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
||| | ||| | || || ||||| | || || || |||||||||||
Sbjct 1170073 TTCCAAGGTAATGGTCTTACCGGTTAAGGTCTTGACGAAAATCTGCAT 1170120
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475500734618640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |