Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F001708105.1_202016-08-12]
11 sequences; 9,597,535 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq2 116 3e-21
seq4 113 4e-20
seq3 95.1 1e-14
>seq2
Length=2687137
Score = 116 bits (128), Expect = 3e-21
Identities = 157/216 (73%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185
|||| || || |||| || || ||||| ||||| || || ||| | ||| ||
Sbjct 1169906 CTCAGAACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCTACCG 1169965
Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245
|| |||||||| || || || | ||||| ||||| ||||| || ||||| ||||| ||
Sbjct 1169966 TCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGTTGGTCAGGAGGAATTCCTTCCTTG 1170025
Query 45246 TCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304
|||||||| || |||| || | || | ||||||||| ||||||||||| | ||||
Sbjct 1170026 TCTTGAATCTTGGACTTGA-CGTTGTCGATGGTGTCGGAGGACTCGACTTCCAAGGTAAT 1170084
Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || ||||||| || || || ||||| |||||
Sbjct 1170085 GGTCTTACCGGTTAAGGTCTTGACGAAAATCTGCAT 1170120
>seq4
Length=1577441
Score = 113 bits (124), Expect = 4e-20
Identities = 156/216 (72%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185
|| || |||| || || || ||||||||||| || ||||| || | ||| |
Sbjct 1239719 CTTAAAACTAAGTGAAGAGTGGATTCCTTTTGAATGTTATAGTCAGAAAGAGTTCTGCCG 1239778
Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245
|| |||||||| || ||||| | || || |||||||| || || ||||| ||||| ||
Sbjct 1239779 TCTTCCAATTGCTTACCTGCAAAGATTAAACGTTGCTGATCAGGAGGAATACCTTCCTTG 1239838
Query 45246 TCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304
|| ||||| || |||| || | || | |||||| || ||||| || ||||| ||||
Sbjct 1239839 TCCTGAATCTTAGACTTGA-CGTTGTCAATGGTGTCTGATGACTCCACCTCGAGGGTAAT 1239897
Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| |||||||||| || || || || ||||||||
Sbjct 1239898 AGTCTTGCCGGTTAAGGTCTTGACGAAGATTTGCAT 1239933
Score = 109 bits (120), Expect = 5e-19
Identities = 148/204 (73%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197
|| || || ||||||||||| || ||||| || | ||| | || ||||||||
Sbjct 1239959 TGAAGAGTGGATTCCTTTTGAATGTTATAGTCAGAAAGAGTTCTGCCGTCTTCCAATTGC 1240018
Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257
|| ||||| | || || |||||||| || || ||||| ||||| || || ||||| ||
Sbjct 1240019 TTACCTGCAAAGATTAAACGTTGCTGATCAGGAGGAATACCTTCCTTGTCCTGAATCTTA 1240078
Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316
|||| || | || | |||||| || ||||| || ||||| |||| || ||||||||
Sbjct 1240079 GACTTGA-CGTTGTCAATGGTGTCTGATGACTCCACCTCGAGGGTAATAGTCTTGCCGGT 1240137
Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340
|| || || || || ||||||||
Sbjct 1240138 TAAGGTCTTGACGAAGATTTGCAT 1240161
Score = 109 bits (120), Expect = 5e-19
Identities = 148/204 (73%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197
|| || || ||||||||||| || ||||| || | ||| | || ||||||||
Sbjct 1240187 TGAAGAGTGGATTCCTTTTGAATGTTATAGTCAGAAAGAGTTCTGCCGTCTTCCAATTGC 1240246
Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257
|| ||||| | || || |||||||| || || ||||| ||||| || || ||||| ||
Sbjct 1240247 TTACCTGCAAAGATTAAACGTTGCTGATCAGGAGGAATACCTTCCTTGTCCTGAATCTTA 1240306
Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316
|||| || | || | |||||| || ||||| || ||||| |||| || ||||||||
Sbjct 1240307 GACTTGA-CGTTGTCAATGGTGTCTGATGACTCCACCTCGAGGGTAATAGTCTTGCCGGT 1240365
Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340
|| || || || || ||||||||
Sbjct 1240366 TAAGGTCTTGACGAAGATTTGCAT 1240389
Score = 109 bits (120), Expect = 5e-19
Identities = 148/204 (73%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197
|| || || ||||||||||| || ||||| || | ||| | || ||||||||
Sbjct 1240415 TGAAGAGTGGATTCCTTTTGAATGTTATAGTCAGAAAGAGTTCTGCCGTCTTCCAATTGC 1240474
Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257
|| ||||| | || || |||||||| || || ||||| ||||| || || ||||| ||
Sbjct 1240475 TTACCTGCAAAGATTAAACGTTGCTGATCAGGAGGAATACCTTCCTTGTCCTGAATCTTA 1240534
Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316
|||| || | || | |||||| || ||||| || || ||||| | || || || ||
Sbjct 1240535 GACTTGA-CGTTGTCAATGGTGTCTGATGACTCCACCTCAAGAGTGATAGTCTTACCTGT 1240593
Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340
||| ||||| |||||||| |||||
Sbjct 1240594 TAGGGTTTTCACAAAAATCTGCAT 1240617
>seq3
Length=1828518
Score = 95.1 bits (104), Expect = 1e-14
Identities = 145/204 (71%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197
|||| || || ||||||||||| || || || | ||| || ||| ||||||||
Sbjct 868938 TGCAAGGTAGACTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTACCATCCTCCAATTGC 868879
Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257
|| || || | |||| || || ||||| || ||||| || || || || ||||| ||
Sbjct 868878 TTACCAGCAAAGATCAGACGCTGTTGGTCAGGAGGAATTCCCTCCTTGTCCTGAATCTTG 868819
Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316
|||| || | || | |||||||||||||| || || | || | || || |||||
Sbjct 868818 GACTTGA-CGTTGTCAATAGTGTCGGAAGACTCCACCTCCAAGGTGATAGTCTTACCGGT 868760
Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340
|| || ||||| |||||||||||
Sbjct 868759 AAGGGTCTTTACGAAAATTTGCAT 868736
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 452003137849560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |