Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F001708105.1_202016-08-12] 11 sequences; 9,597,535 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq2 116 3e-21 seq4 113 4e-20 seq3 95.1 1e-14 >seq2 Length=2687137 Score = 116 bits (128), Expect = 3e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 |||| || || |||| || || ||||| ||||| || || ||| | ||| || Sbjct 1169906 CTCAGAACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCTACCG 1169965 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || |||||||| || || || | ||||| ||||| ||||| || ||||| ||||| || Sbjct 1169966 TCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGTTGGTCAGGAGGAATTCCTTCCTTG 1170025 Query 45246 TCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 |||||||| || |||| || | || | ||||||||| ||||||||||| | |||| Sbjct 1170026 TCTTGAATCTTGGACTTGA-CGTTGTCGATGGTGTCGGAGGACTCGACTTCCAAGGTAAT 1170084 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||||| || || || ||||| ||||| Sbjct 1170085 GGTCTTACCGGTTAAGGTCTTGACGAAAATCTGCAT 1170120 >seq4 Length=1577441 Score = 113 bits (124), Expect = 4e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 || || |||| || || || ||||||||||| || ||||| || | ||| | Sbjct 1239719 CTTAAAACTAAGTGAAGAGTGGATTCCTTTTGAATGTTATAGTCAGAAAGAGTTCTGCCG 1239778 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || |||||||| || ||||| | || || |||||||| || || ||||| ||||| || Sbjct 1239779 TCTTCCAATTGCTTACCTGCAAAGATTAAACGTTGCTGATCAGGAGGAATACCTTCCTTG 1239838 Query 45246 TCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 || ||||| || |||| || | || | |||||| || ||||| || ||||| |||| Sbjct 1239839 TCCTGAATCTTAGACTTGA-CGTTGTCAATGGTGTCTGATGACTCCACCTCGAGGGTAAT 1239897 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || |||||||||| || || || || |||||||| Sbjct 1239898 AGTCTTGCCGGTTAAGGTCTTGACGAAGATTTGCAT 1239933 Score = 109 bits (120), Expect = 5e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || ||||||||||| || ||||| || | ||| | || |||||||| Sbjct 1239959 TGAAGAGTGGATTCCTTTTGAATGTTATAGTCAGAAAGAGTTCTGCCGTCTTCCAATTGC 1240018 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || ||||| | || || |||||||| || || ||||| ||||| || || ||||| || Sbjct 1240019 TTACCTGCAAAGATTAAACGTTGCTGATCAGGAGGAATACCTTCCTTGTCCTGAATCTTA 1240078 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 |||| || | || | |||||| || ||||| || ||||| |||| || |||||||| Sbjct 1240079 GACTTGA-CGTTGTCAATGGTGTCTGATGACTCCACCTCGAGGGTAATAGTCTTGCCGGT 1240137 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 || || || || || |||||||| Sbjct 1240138 TAAGGTCTTGACGAAGATTTGCAT 1240161 Score = 109 bits (120), Expect = 5e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || ||||||||||| || ||||| || | ||| | || |||||||| Sbjct 1240187 TGAAGAGTGGATTCCTTTTGAATGTTATAGTCAGAAAGAGTTCTGCCGTCTTCCAATTGC 1240246 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || ||||| | || || |||||||| || || ||||| ||||| || || ||||| || Sbjct 1240247 TTACCTGCAAAGATTAAACGTTGCTGATCAGGAGGAATACCTTCCTTGTCCTGAATCTTA 1240306 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 |||| || | || | |||||| || ||||| || ||||| |||| || |||||||| Sbjct 1240307 GACTTGA-CGTTGTCAATGGTGTCTGATGACTCCACCTCGAGGGTAATAGTCTTGCCGGT 1240365 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 || || || || || |||||||| Sbjct 1240366 TAAGGTCTTGACGAAGATTTGCAT 1240389 Score = 109 bits (120), Expect = 5e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || ||||||||||| || ||||| || | ||| | || |||||||| Sbjct 1240415 TGAAGAGTGGATTCCTTTTGAATGTTATAGTCAGAAAGAGTTCTGCCGTCTTCCAATTGC 1240474 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || ||||| | || || |||||||| || || ||||| ||||| || || ||||| || Sbjct 1240475 TTACCTGCAAAGATTAAACGTTGCTGATCAGGAGGAATACCTTCCTTGTCCTGAATCTTA 1240534 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 |||| || | || | |||||| || ||||| || || ||||| | || || || || Sbjct 1240535 GACTTGA-CGTTGTCAATGGTGTCTGATGACTCCACCTCAAGAGTGATAGTCTTACCTGT 1240593 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 ||| ||||| |||||||| ||||| Sbjct 1240594 TAGGGTTTTCACAAAAATCTGCAT 1240617 >seq3 Length=1828518 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 |||| || || ||||||||||| || || || | ||| || ||| |||||||| Sbjct 868938 TGCAAGGTAGACTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTACCATCCTCCAATTGC 868879 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | |||| || || ||||| || ||||| || || || || ||||| || Sbjct 868878 TTACCAGCAAAGATCAGACGCTGTTGGTCAGGAGGAATTCCCTCCTTGTCCTGAATCTTG 868819 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 |||| || | || | |||||||||||||| || || | || | || || ||||| Sbjct 868818 GACTTGA-CGTTGTCAATAGTGTCGGAAGACTCCACCTCCAAGGTGATAGTCTTACCGGT 868760 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| ||||||||||| Sbjct 868759 AAGGGTCTTTACGAAAATTTGCAT 868736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452003137849560