Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F001708105.1_202016-08-12]
11 sequences; 9,597,535 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq3 152 1e-31
seq4 147 5e-30
seq1 87.8 4e-12
>seq3
Length=1828518
Score = 152 bits (168), Expect = 1e-31
Identities = 169/225 (75%), Gaps = 3/225 (1%)
Strand=Plus/Minus
Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473
||| ||||| | ||| | || ||||||||||||| ||||||||||| |||||| || ||
Sbjct 868951 TCTAAGGACCAAGTGCAAGGTAGACTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTACC 868892
Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533
||| |||| ||||| || || ||||| |||||||| ||||| ||| |||||| ||
Sbjct 868891 ATCCTCCAATTGCTTACCAGCAAAGATCAGACGCTGTTGGTCAGGAGGAATTCCCTCCTT 868832
Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593
||||||||||| ||| ||| || | ||||| | | || || ||||| |||||
Sbjct 868831 GTCCTGAATCTTGGACTTGACGTTGTCAATAGTGTCGGAAGACTCCACCTCCAAGGTGAT 868772
Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTTAGC 199638
|||||||| || || || || || |||||||| |||||| ||
Sbjct 868771 AGTCTTACCGGTAAGGGTCTTTACGAAAATTTG---CATTTTGGC 868730
>seq4
Length=1577441
Score = 147 bits (162), Expect = 5e-30
Identities = 166/222 (75%), Gaps = 3/222 (1%)
Strand=Plus/Plus
Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473
||||||||| | ||| ||||| || |||||||| | ||| ||||||| | ||| || ||
Sbjct 1240402 TCTCAGGACCAAGTGAAGAGTGGATTCCTTTTGAATGTTATAGTCAGAAAGAGTTCTGCC 1240461
Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533
||||||| ||||| || || ||||| | ||| ||||| || ||| ||| |||||
Sbjct 1240462 GTCTTCCAATTGCTTACCTGCAAAGATTAAACGTTGCTGATCAGGAGGAATACCTTCCTT 1240521
Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593
||||||||||| ||| ||| || | |||||||| || || || || | |||||
Sbjct 1240522 GTCCTGAATCTTAGACTTGACGTTGTCAATGGTGTCTGATGACTCCACCTCAAGAGTGAT 1240581
Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635
|||||||| || || |||||||||||||| || ||||||
Sbjct 1240582 AGTCTTACCTGTTAGGGTTTTCACAAAAATCTG---CATTTT 1240620
Score = 118 bits (130), Expect = 2e-21
Identities = 154/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473
||||||||| | ||| ||||| || |||||||| | ||| ||||||| | ||| || ||
Sbjct 1239946 TCTCAGGACCAAGTGAAGAGTGGATTCCTTTTGAATGTTATAGTCAGAAAGAGTTCTGCC 1240005
Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533
||||||| ||||| || || ||||| | ||| ||||| || ||| ||| |||||
Sbjct 1240006 GTCTTCCAATTGCTTACCTGCAAAGATTAAACGTTGCTGATCAGGAGGAATACCTTCCTT 1240065
Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593
||||||||||| ||| ||| || | |||||||| || || || || | || ||
Sbjct 1240066 GTCCTGAATCTTAGACTTGACGTTGTCAATGGTGTCTGATGACTCCACCTCGAGGGTAAT 1240125
Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| || || | || || || || |||||
Sbjct 1240126 AGTCTTGCCGGTTAAGGTCTTGACGAAGATTTG 1240158
Score = 118 bits (130), Expect = 2e-21
Identities = 154/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473
||||||||| | ||| ||||| || |||||||| | ||| ||||||| | ||| || ||
Sbjct 1240174 TCTCAGGACCAAGTGAAGAGTGGATTCCTTTTGAATGTTATAGTCAGAAAGAGTTCTGCC 1240233
Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533
||||||| ||||| || || ||||| | ||| ||||| || ||| ||| |||||
Sbjct 1240234 GTCTTCCAATTGCTTACCTGCAAAGATTAAACGTTGCTGATCAGGAGGAATACCTTCCTT 1240293
Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593
||||||||||| ||| ||| || | |||||||| || || || || | || ||
Sbjct 1240294 GTCCTGAATCTTAGACTTGACGTTGTCAATGGTGTCTGATGACTCCACCTCGAGGGTAAT 1240353
Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| || || | || || || || |||||
Sbjct 1240354 AGTCTTGCCGGTTAAGGTCTTGACGAAGATTTG 1240386
Score = 105 bits (116), Expect = 2e-17
Identities = 144/201 (72%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485
||| ||||| || |||||||| | ||| ||||||| | ||| || || ||||||| ||
Sbjct 1239730 GTGAAGAGTGGATTCCTTTTGAATGTTATAGTCAGAAAGAGTTCTGCCGTCTTCCAATTG 1239789
Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545
||| || || ||||| | ||| ||||| || ||| ||| ||||| |||||||||||
Sbjct 1239790 CTTACCTGCAAAGATTAAACGTTGCTGATCAGGAGGAATACCTTCCTTGTCCTGAATCTT 1239849
Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605
||| ||| || | |||||||| || || || || | || || ||||| || ||
Sbjct 1239850 AGACTTGACGTTGTCAATGGTGTCTGATGACTCCACCTCGAGGGTAATAGTCTTGCCGGT 1239909
Query 199606 GAGAGTTTTCACAAAAATTTG 199626
| || || || || |||||
Sbjct 1239910 TAAGGTCTTGACGAAGATTTG 1239930
>seq1
Length=3325186
Score = 87.8 bits (96), Expect = 4e-12
Identities = 156/225 (69%), Gaps = 2/225 (1%)
Strand=Plus/Minus
Query 167768 GCGTCCTTGTAGACGATGAAGGGCATACCAACCTCCGCTTGAGCCACCAAAATGTGGTGC 167827
|| ||||| || | ||||| || |||| || | || ||| | | ||| || |
Sbjct 2236068 GCATCCTTATACAACATGAATGGAGTACCGGTTTCTGTCTGTGCCTCGAGGATGGCGTAC 2236009
Query 167828 CAAAGTTCTTGGGCTTTTACGGTAGTTCTCGCTCTTCCTTCTTTTTCGTATCTCTCATAG 167887
||||| | ||||||||| | ||| ||| | | ||||| ||||||||||| || ||
Sbjct 2236008 CAAAGCTTTTGGGCTTTGATGGTTTGTCTTCCACGACCTTCCTTTTCGTATCTTTCGTAC 2235949
Query 167888 AGGTCTTCGAAATCCTTCCCGTAAATTTCGTCAAGACCGGGAGCTTCCTTCGGACAAAAG 167947
|| ||||| || || | ||||| | ||| |||| || ||||| || | ||| | ||
Sbjct 2235948 AGTTCTTCAAATTCATCGCCGTAGACGTCGGCAAGGCCAGGAGCCTCACTTGGAGAGAAC 2235889
Query 167948 AGACTCCAATTTCCA-TCGGTCTCGACCCTCTTCATGAAGAGGTC 167991
|| |||| | ||| || || |||||||| |||||||| || ||
Sbjct 2235888 AGGGTCCATTCGCCATTCTGT-TCGACCCTTTTCATGAACAGATC 2235845
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178921433845737
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |