Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F001708105.1_202016-08-12] 11 sequences; 9,597,535 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq2 201 1e-46 seq3 104 2e-17 >seq2 Length=2687137 Score = 201 bits (222), Expect = 1e-46 Identities = 399/585 (68%), Gaps = 17/585 (3%) Strand=Plus/Plus Query 132885 GAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCT 132944 ||| | |||||||||||||||| || || || || || ||| |||| || || ||| Sbjct 442997 GAATAGCAAGCAAGCAAAGTCGGTGTGTAATCCTTCATCTCTGCAAATAAGCTCATTGGA 443056 Query 132945 GAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCC 133004 ||| ||||| || ||||| || || | ||||| | ||| || || | |||||| ||| Sbjct 443057 GAAGGTCAAACCTGGCATAAGACCTCTCTTTTTCAACCAGAAGATAGAAGCGAAAGAGCC 443116 Query 133005 CGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTC 133064 ||||||||||| || || || || ||||| || |||| || || ||||| || || Sbjct 443117 CGAAAAGAAGATACCTTCAACAGCAGCGAAGGCAACCAAACGTTCAGCGAACAAAGCATC 443176 Query 133065 TTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTC 133124 | ||| ||||| | || ||||| || ||||||||||||| || || || || || Sbjct 443177 GTCATCGGCAATCCATCTCATGGCCCAGTCAGCCTTTTCTTTGATACATGGAATGGTCTC 443236 Query 133125 GATGGCGTTCAACAA----ACGGAGTTTCTCTTCCGAGGAAC--GCACGTAGGTGTCGAT 133178 |||||| || ||||| |||| |||| || ||| | | ||| || || || Sbjct 443237 GATGGCATTGAACAAGAATTCGGA--TTCTTTT----GGATCTTTGATGTAAGTATCAAT 443290 Query 133179 GAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCA 133238 | || || |||| ||||| | ||||||||| ||||||||| |||||||| || Sbjct 443291 CAACAATGAGTAAGTTTCGGAGTGGATGTTCTCCATCATGATTTGAAAACCGTAAAAACA 443350 Query 133239 CCGCGCCTCGACCACCTGCACTTCTTGAGC-GAAACGCTCGACCAGATTTTCGTTGACGA 133297 || ||| | || || || | || ||| || |||| |||||| ||||| | Sbjct 443351 TTTTGCTTCGGGAAGTTGAACCTC-AGCGCTGAAGTTTTCCACCAAATTTTCATTGACAA 443409 Query 133298 TGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGT 133357 | || || ||| || |||||||| || || ||| |||| ||| ||||||| Sbjct 443410 TACCATCAGAGGCAGCAAAAAAGGCAAGAACTCTAGAGATAAAATACTTCTCATTGTCGT 443469 Query 133358 TCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAA 133414 ||| || | |||||| || ||||| || ||| | |||||| | ||||||| Sbjct 443470 TCATACGATTATTCCAGTCATGCAAATCCTTTCCCAAGTCTATTTCCTCGGCAGTCCAAA 443529 Query 133415 ACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGAATATT 133459 | || || ||||| | ||||||||| ||| ||||| ||||| Sbjct 443530 AGGAAGCTTCGGCCTGTTTGTACATTTGCCAGATGTCGTGATATT 443574 Score = 105 bits (116), Expect = 7e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||||||||| || ||||| || || | || || || ||||| ||| | || |||||| | Sbjct 1170124 AAAAATGCAGATTTTCGTCAAGACCTTAACCGGTAAGACCATTACCTTGGAAGTCGAGTC 1170065 Query 38300 CACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG 38358 | |||||| | | | |||| | || || || | ||||| || |||||||| | | Sbjct 1170064 CTCCGACACCATCGACAACG-TCAAGTCCAAGATTCAAGACAAGGAAGGAATTCCTCCTG 1170006 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 ||||||| || | |||| || || || || |||| |||| | || || ||||| Sbjct 1170005 ACCAACAACGTTTGATTTTTGCTGGTAAGCAATTGGAAGACGGTAGAACTCTGTCCGACT 1169946 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||| ||||| | || |||| |||| ||| | |||||||| || Sbjct 1169945 ACAACATCCAGAAGGAGTCTACTTTGCACCTGGTTCTGAGATTGAGAGGTGG 1169894 >seq3 Length=1828518 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 ||||||||||| |||||||| || || || || || || |||||| | || || ||| | Sbjct 868733 AAAATGCAAATTTTCGTAAAGACCCTTACCGGTAAGACTATCACCTTGGAGGTGGAGTCT 868792 Query 38301 ACCGACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 |||||| || |||| | || || || | ||||| ||||||||||| | || Sbjct 868793 TCCGACACTATTGACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCTCCTGA 868851 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||||||||| || || | || || || || |||| || | | || | ||||| Sbjct 868852 CCAACAGCGTCTGATCTTTGCTGGTAAGCAATTGGAGGATGGTAGAACTTTGTCTGACTA 868911 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||||||||| | || |||| ||||| || | |||||||| || Sbjct 868912 CAACATCCAAAAGGAGTCTACCTTGCACTTGGTCCTTAGATTGAGAGGTGG 868962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172731226240