Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F001708105.1_202016-08-12] 11 sequences; 9,597,535 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1 201 1e-46 seq3 93.3 5e-14 seq2 89.7 6e-13 >seq1 Length=3325186 Score = 201 bits (222), Expect = 1e-46 Identities = 886/1382 (64%), Gaps = 33/1382 (2%) Strand=Plus/Plus Query 111627 ATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTTTTGGAGACATACGAC 111686 ||||| ||||| |||||||| ||||| || || |||| ||| | || || ||| || Sbjct 2235353 ATGCGTGTCGCTATCGGTATTCATGGTGATGACATTGCAAGGGTTATTGAAACCTACAAC 2235412 Query 111687 AAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAACCCTCTTCAACGCTGGTACACC 111745 ||| | | |||| |||| ||||| | || || || || ||||||||||| || Sbjct 2235413 TTTATGAGTCAGAAGTAT-TTCACTCACGCCTCTCCTACTCTGTTTAACGCTGGTACCCC 2235471 Query 111746 AAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGATTCAATCAATGGCAT 111805 || |||||||| |||||| | |||| | ||| || || || | || || Sbjct 2235472 TCACCCACAAATGTCGTCATGTTTCTTAGTTGCCATGCGGGATGACTCGATTGAAGGTAT 2235531 Query 111806 TTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGTGGTATCGGGATGCA 111865 ||| | ||| | | |||||||| ||| || || |||||||| || || |||| Sbjct 2235532 TTATGATACTTTGAAGGAATGTGCTTTAATTTCCAAAACTGCTGGTGGAATTGGTTTGCA 2235591 Query 111866 CATCCATGATGTCAGAGCCAACAAG-TCTCGTATTAGAGGTACAAATGGTCAATCAGATG 111924 ||| ||| || | | ||| ||| | || ||| ||||| || ||| || | | Sbjct 2235592 CATTCATAATATTCGTGCC-ACAGGATCCTACATTGCTGGTACTAACGGTACTTCGAACG 2235650 Query 111925 GTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAACCAAGCTGGGC 111984 |||||||||||||| | | || || ||| ||| || || ||||| | |||| || Sbjct 2235651 GTATTATTCCAATGGTGAGAGTTTTCAACAACACCGCTCGTTATGTTGATCAAGGTG--- 2235707 Query 111985 GTCGCAAGGGATCTATCGCAGT--CTAT---CTT-GAGCCATGGCACGCGGATATCATGG 112038 || |||| | || ||| | || | ||| || |||||||| ||||| ||| | | Sbjct 2235708 GTAACAAGCGCCCTGGTGCATTTGCTTTGTACTTGGAACCATGGCATGCGGACATCTTCG 2235767 Query 112039 AGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCC-GCGATCTCTTC 112097 || |||| | ||| ||||| || | ||||| | | ||| | ||||| ||| Sbjct 2235768 CCTTTATTGACATTCGTAAGAACCATGGAAAAGAGGA-AATCAGAGCCAGAGATCTATTC 2235826 Query 112098 TCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCT 112157 | ||||| ||||| || ||||| |||||||| || || || ||| |||| | ||| | Sbjct 2235827 CCGGCTCTATGGATCCCTGATCTGTTCATGAAAAGGGTCGAACAGAATGGCGAATGGACC 2235886 Query 112158 CTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCC 112217 || || | |||| |||| || || || |||| | | || || || ||||||| Sbjct 2235887 CTGTTCTCTCCAAGTGAGGCTCCTGGCCTTGCCGACGTCTACGGCGATGAATTTGAAGAA 2235946 Query 112218 CTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGACGGTGCCAGCTGCCGATGTG 112277 || ||| || ||||| | ||| |||| | | || | ||| | | Sbjct 2235947 CTGTACGAAAGATACGAAAAGGAAGGTCGTGGAAGACAAACCATCAAAGCCCAAAAGCTT 2236006 Query 112278 TGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGAC 112337 ||| | || || ||| || | || || || || ||||| |||| ||| | || || || Sbjct 2236007 TGGTACGCCATCCTCGAGGCACAGACAGAAACCGGTACTCCATTCATGTTGTATAAGGAT 2236066 Query 112338 GCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGT 112397 || |||||| | || | || || ||||| |||||||| || || || ||||| ||| Sbjct 2236067 GCTTGTAACAAGAAAACCAACCAGAAGAACTTGGGTGTCATTAAATCCTCTAACCTTTGT 2236126 Query 112398 ACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATC 112457 || || | || | | | | ||| || || ||||| |||||| | || || || Sbjct 2236127 TGTGAGATTGTTGAGTATTCTTCCCCAGAAGAAACTGCTGTCTGTAACTTGGCTTCTATT 2236186 Query 112458 GCTCTCCCCAAGTATGTGGATCCAGA-GACAAAGACATTTG-----ATTATGAAAAACTC 112511 ||||| || | ||| || | || || | || ||| | | |||||| || Sbjct 2236187 GCTCTTCCAGCCTTTGTTGAAACCGATGATACTCACTGTTGGTACAACTTTGAAAAGCTG 2236246 Query 112512 CACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAAATTTTTAC 112571 || || | ||||| ||||| ||| | |||||| |||| || ||||| | ||| Sbjct 2236247 CATGACATCACGAAGGTGGTCACTCGTAACTTGAACAGAATTATCGACAGAAACTACTAC 2236306 Query 112572 CCCGTT-GAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCA 112630 || ||| ||| ||| | | ||| || ||| | | | ||||||| | | ||||| || Sbjct 2236307 CCGGTTCCAGA-GGCTAGGAGATCCAACATGCGTAATAGACCAATTGCTGTTGGTGTTCA 2236365 Query 112631 AGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGA 112690 |||| | || |||| ||||| | | | |||||||||| || || ||| | Sbjct 2236366 AGGTTTAGCTGATGCTTTCATGAAGTTGAGAATCCCATTTGATTCTCCAGAGGCTAAGCA 2236425 Query 112691 AATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTG--AGGCGAGTTCGGAG 112748 | | ||| | || || || || || || || | || |||| || | | | || Sbjct 2236426 ACTTAATATCCAGATTTTCGAAACTATCTACCATGGAGC-CTTGGAAGCCTCGAGC-GAA 2236483 Query 112749 TTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTG 112808 || || | | || || | || ||||||||| | ||||||||||| || || || | Sbjct 2236484 TTAGCCGTTGAGGAAGGAGCTTACGAAACCTTTCAAGGTTCTCCAGCATCTCAGGGTATT 2236543 Query 112809 CTTCAATTTGATATGTGGGAAGGTGAGACC---AAGCTTCACTACGACTGGGACGCTCTC 112865 | || | |||| ||||||| || || |||| | || ||||| | ||| Sbjct 2236544 TTGCAGTATGATTTGTGGGACAAAAAGCCCTCTGAGCT---GTGGGAATGGGAGTCACTC 2236600 Query 112866 AAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACA 112925 || | || | || |||||| | ||| ||| | | ||||| ||||| || Sbjct 2236601 AAAGCCAAGATTATTTCGACAGGTCTTAGAAACTCGCTTCTAGTTGCACCTATGCCTACT 2236660 Query 112926 GCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATC 112985 || || || | || || |||||| | || || || || ||||| || || | |||||| Sbjct 2236661 GCTTCAACTTCCCAGATTTTGGGTTACAACGAGTGTTTCGAACCTTATACTTCTAACATC 2236720 Query 112986 TA 112987 || Sbjct 2236721 TA 2236722 >seq3 Length=1828518 Score = 93.3 bits (102), Expect = 5e-14 Identities = 211/313 (67%), Gaps = 11/313 (4%) Strand=Plus/Plus Query 16056 TTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACT 16115 ||||| | |||||| || ||||||| |||| || | || || ||| || || | Sbjct 1567937 TTTCCAATGGCATCGATTTCATCAACAAAGATAATACTAGGAGCATCTTCTCGTGCTGTT 1567996 Query 16116 TCAAAGAGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTG 16173 | ||| ||||| || || | ||| || || ||||| |||||||| |||||||| | || Sbjct 1567997 TTAAAAAGATCACGAACTC--TTGAAGCTCCAACACCCACAAACATTTCCACAAATTCTG 1568054 Query 16174 CGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 16233 | ||| | | || || ||| || |||||| || |||| || | ||||| Sbjct 1568055 AACCAGAAACTGAGTAAAATGGAACACCAGCTTCACCAGCTGTGGCCTTTGCCAAAAGAG 1568114 Query 16234 TCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC---AC 16290 ||||||| |||||||| ||| | || | ||||||| |||||| || || || | Sbjct 1568115 TCTTACCAGTACCTGGAGGACCAGAAAGAATAGCACCTCTTGGAATTTTAGCTCCTAGCC 1568174 Query 16291 TTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATCTCTTCCAATTCATCTTTGG 16350 || | |||| | |||| | ||| | ||| | |||| ||| | ||| ||||||| Sbjct 1568175 TTTC---GTATTTGGCAGGGTTCTTCAAAAACTTGACAAACTCCATTATTTCCTCTTTGG 1568231 Query 16351 CGGCGTCA-ATCC 16362 | ||||| |||| Sbjct 1568232 CTTCGTCACATCC 1568244 >seq2 Length=2687137 Score = 89.7 bits (98), Expect = 6e-13 Identities = 339/521 (65%), Gaps = 16/521 (3%) Strand=Plus/Minus Query 102099 GCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT 102158 |||||| | || |||||||||| || | || || || ||||| |||| ||| ||| Sbjct 443242 GCCATCGAGACCATTCCATGTATCAAAGAAAAGGCTGACTGGGCCATGAGATGGATTGCC 443183 Query 102159 -ACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTT 102217 | | | || || || ||||| || | | || || || |||||| |||||||| Sbjct 443182 GATGACGATGCTTTG-TTCGCTGAACGTTTGGTTGCCTTCGCTGCTGTTGAAGGTATCTT 443124 Query 102218 CTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCT 102277 ||| || || || ||| |||| | ||| | || ||| ||||||| ||||||||| | Sbjct 443123 CTTTTCGGGCTCTTTCGCTTCTATCTTCTGGTTGAAAAAGAGAGGTCTTATGCCAGGTTT 443064 Query 102278 CTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC--GGTG 102335 ||||||||| |||||||| | | || || ||| | ||| || ||||| | | Sbjct 443063 GACCTTCTCCAATGAGCTTATTTGCAGAGATGAAGGATTACACACCGACTTTGCTTGCTT 443004 Query 102336 GAACTTTTCAAATTATTGCGTATTA-AACCAACGACTGAGACTATTCATTCTATTGTTAA 102394 | || ||| ||| | | | ||| || || | || | ||| ||| Sbjct 443003 G--CTATTCTCTCACTTGAACAACAGAGCCAGTGA-GGAAATCGTTGAAAAGATTATTAC 442947 Query 102395 GGAAGCCGTTGAGATTGAGAAGGGATTCATATTGGATGCCCTTCCATGCGCTCTCATCGG 102454 || || || |||||||| || ||| | | ||||| ||||| | | | || Sbjct 442946 AGAGGCTGTCGAGATTGAAAAAAGATACTTCACAGATGCTCTTCCTGTTTCCTTGCTGGG 442887 Query 102455 TATGAATTCTGAA--AAGATGTCCGAATATATTGAGTATGTATCTGATAGATTGTTGAAG 102512 ||||| ||| | ||||| | | ||| |||||| || |||||||| | || | Sbjct 442886 AATGAA--CTGCAGCTTGATGTGCCAGTATGTTGAGTTCGTTGCTGATAGACTACTG--G 442831 Query 102513 CAGATCGGGGTGCCTCCAA--TTTGGAACTCCAAGAATCCATTTGACTTCATGGAGAACA 102570 || || ||| | || | | ||| || ||||||||||| ||||||||||||| Sbjct 442830 TAGCTCTGGGCAACAAAAAAGTGTACAACGTCACCAATCCATTTGATTTCATGGAGAACA 442771 Query 102571 TTAGCCTCGACGGGAAGACAAACTTCTTCGAAAAGAGGGTT 102611 || | | || ||||| ||||||||||||||||| ||| Sbjct 442770 TTTCTTTGGCTGGTAAGACCAACTTCTTCGAAAAGAGAGTT 442730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742314647920