Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F001708105.1_202016-08-12]
11 sequences; 9,597,535 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq2 311 1e-79
seq1 210 2e-49
>seq2
Length=2687137
Score = 311 bits (344), Expect = 1e-79
Identities = 614/898 (68%), Gaps = 13/898 (1%)
Strand=Plus/Plus
Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729
||||| || || | |||||| ||||| ||||| || || || || | || || ||
Sbjct 442716 TTTTGGTAATCAGAAACTCTCTTTTCGAAGAAGTTGGTCTTACCAGCCAAAGAAATGTTC 442775
Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789
||||| |||||||||||||| | || || || | ||||||| || | ||| |||
Sbjct 442776 TCCATGAAATCAAATGGATTGGTGACGTTGTACACTTTTTTGTTGCCCAGAGCTACCAGT 442835
Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849
|||||||| || || || | || ||| | ||||| || |||||||| | ||
Sbjct 442836 AGTCTATCAGCAACGAACTCAACATACTGGCACATCAAGCTGCAGTTCATTCCCAGCAAG 442895
Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATA 18909
|||||| || |||||||| | || || ||| || | || ||||||| |||||
Sbjct 442896 GAAACAGGAAGAGCATCTGTGAAGTATCTTTTTTCAATCTCGACAGCCTCTGTAATAATC 442955
Query 18910 GATACAACTCTATCTTCATTAGGAGGGTA-TAGAAGATGTTTAAACATCAAACATGCAAA 18968
| |||| | || ||| | | || | ||| || || | ||| || |||||
Sbjct 442956 TTTTCAACGATTTCCTCACTGGCTCTGTTGTTCAAG-TGAGAGAATAGCAAGCAAGCAAA 443014
Query 18969 ATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCAT 19028
|| |||| ||| || ||||| | || | ||||| || || || ||||| |||||
Sbjct 443015 GTCGGTGTGTAATCCTTCATCTCTGCAAATAAGCTCATTGGAGAAGGTCAAACCTGGCAT 443074
Query 19029 CAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTC 19088
|| ||||| ||||| |||||||| |||||||| || || || |||||||| ||||||||
Sbjct 443075 AAGACCTCTCTTTTTCAACCAGAAGATAGAAGCGAAAGAGCCCGAAAAGAAGATACCTTC 443134
Query 19089 TACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTT 19148
|| || || || ||||| | | ||| | | |||||| | || ||||||| |
Sbjct 443135 AACAGCAGCGAAGGCAACCAAACGTTCAGCGAACAAAGCATCGTCATCGGCAATCCATCT 443194
Query 19149 CAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATA 19208
|| ||||| |||||||| | ||| | |||||| || ||||| || | ||| || | | |
Sbjct 443195 CATGGCCCAGTCAGCCTTTTCTTTGATACATGGAATGGTCTCGATGGCATTGAACA-AGA 443253
Query 19209 CATACGC--TCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAA 19266
|| || || | || |||||| | || | ||| ||||| || ||| |||| ||
Sbjct 443254 -ATTCGGATTCTTTTGGATCTTTGATGTAAGTATCAATCAACAATGAGTAAGTTTCGGAG 443312
Query 19267 TGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACT 19326
|| || || || || || ||||| |||||||||||| ||||||| | | || ||
Sbjct 443313 TGGATGTTCTCCATCATGATTTGAAAACCGTAAAAACATTTTGCTTCGGGAAGTTGAACC 443372
Query 19327 TCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAAT 19386
||| | || |||| |||||||||||||| || || |||||| || ||||||||
Sbjct 443373 TCAGCGCTGAAGTTTTCCACCAAATTTTCATTGACAATACCATCAGAGGCAGCAAAAAAG 443432
Query 19387 GCTAATACATGTTTA-ATAAAATGTTTTTCATCTGAGGTTAAT----GTATTCCAATCAT 19441
|| || | | | | ||||||| || |||| || ||| || ||||||| ||||
Sbjct 443433 GC-AAGAACTCTAGAGATAAAATACTTCTCAT-TGTCGTTCATACGATTATTCCAGTCAT 443490
Query 19442 TAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTAT 19501
| ||| || || |||| ||| || | |||||||| ||||| || || | ||| |
Sbjct 443491 GCAAATCCTTTCCCAAGTCTATTTCCTCGGCAGTCCAAAAGGAAGCTTCGGCCTGTTTGT 443550
Query 19502 ACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATTTTC 19559
|||| | ||| || || |||||| | ||| || | ||| || | | |||||||||
Sbjct 443551 ACATTTGCCAGATGTCGTGATATTTCAAAGGGAAGAGAACGAAACGACGTTTATTTTC 443608
>seq1
Length=3325186
Score = 210 bits (232), Expect = 2e-49
Identities = 614/939 (65%), Gaps = 11/939 (1%)
Strand=Plus/Minus
Query 47876 AAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTAT 47935
||| || ||||| || | ||||| ||||| || | ||| || ||| | | ||
Sbjct 2236192 AAGAGCAATAGAAGCCAAGTTACAGACAGCAGTTTCTTCTGGGGAAGAATACTCAACAAT 2236133
Query 47936 TTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTT 47995
||| ||| || ||| |||| || |||||| || | || || | |||||
Sbjct 2236132 CTCACAACAAAGGTTAGAGGATTTAATGACACCCAAGTTCTTCTGGTTGGTTTTCTTGTT 2236073
Query 47996 ACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGA 48055
||| || ||||| || | ||| || || || || |||||| |||| | || | ||| |
Sbjct 2236072 ACAAGCATCCTTATACAACATGAATGGAGTACCGGTTTCTGTCTGTGCCTCGAGGATGGC 2236013
Query 48056 TTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTAT--TTA 48113
| ||||| | || || || ||| | | || | ||||||| ||
Sbjct 2236012 GTACCAAAGCTTTTGGGCTTTGATGGTTTGTCTTCCACGACCTTCCTTTTCGTATCTTTC 2235953
Query 48114 GTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGA 48173
||| | |||| ||||||||| || || || | | | |||||| ||| | |||
Sbjct 2235952 GTACAGTTCTTC--AAATTCATCGCCGTAGACGTCGGCAAGGCCAGGAGCCTCACTTGGA 2235895
Query 48174 CACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAA 48233
| | || | ||| || ||| | || || || |||| || | ||| || |||||
Sbjct 2235894 GAGAACAGGGTCCATTCGCCATTCTGTTCGACCCTTTTCATGAACAGATCAGGGATCCAT 2235835
Query 48234 AGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCA 48293
||||| |||| ||| || | ||| | ||| || || ||| ||| | || |||
Sbjct 2235834 AGAGCCGGGAATAGATCTCTGGCTCTGATTTCCTCTTTTCCATGGTTCTTACGAATGTCA 2235775
Query 48294 AGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGT 48353
| |||| | | || || |||||||||||||| || || | || | | |||| || ||
Sbjct 2235774 ATAAAGGCGAAGATGTCCGCATGCCATGGTTCCAAGTACAAAGCAAATGCACCAGGGCGC 2235715
Query 48354 TTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACA 48413
|| ||||| |||||||| | ||| | || || ||||| ||||||| | |||||| | |
Sbjct 2235714 TTGTTACCACCTTGATCAACATAACGAGCGGTGTTGTTGAAAACTCTCACCATTGGAATA 2235655
Query 48414 ATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTA 48473
||||| || || |||| || || || | ||| || ||| | || | |||||| |
Sbjct 2235654 ATACCGTTCGAAGTACCGTTAGTACCAGCAATGTAGGATCCTGTGGCACGAATATTATGA 2235595
Query 48474 AT-TGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATC 48532
|| || || ||| || ||||| || |||| || |||| |||||| || | |||||
Sbjct 2235594 ATGTGCAA-ACCAATTCCACCAGCAGTTTTGGAAATTAAAGCACATTCCTTCAAAGTATC 2235536
Query 48533 ATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGG 48592
|||||| ||||| || ||||| ||| | || ||||| |||||||| ||
Sbjct 2235535 ATAAATACCTTCAATCGAGTCATCCCGCATGGCAACTAAGAAACATGACGACATTTGTGG 2235476
Query 48593 ATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCT--CTGAT 48650
||| || || | ||||| | || ||||| || ||| | || | |||| || ||
Sbjct 2235475 GTGAGGGGTACCAGCGTTAAACAGAGTAGGAGAGGCGTGAGTGAAATACTTCTGACTCAT 2235416
Query 48651 AACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACA 48710
|| | || || ||||||||||| | || || ||| ||||| |||| |||
Sbjct 2235415 AA--AGTTGTAGGTTTCAATAACCCTTGCAATGTCATCACCATGAATACCGATAGCGACA 2235358
Query 48711 CGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGAT 48770
||||| | | | |||||| | ||| ||| ||| ||| ||| ||| ||| || |||
Sbjct 2235357 CGCATAATTAAGTGTTGAGGACGTTCTGCAACATTGCCATTAATTCTCAGAAGGTAAGAT 2235298
Query 48771 TTTTCCAATGTTTTAAAACCAAAATAGTTGTA-TGAAAA 48808
||||||| || || || ||||| || || || ||||||
Sbjct 2235297 CTTTCCAAGGTCTTGAATCCAAAGTAATTATACTGAAAA 2235259
Score = 107 bits (118), Expect = 2e-18
Identities = 314/476 (66%), Gaps = 17/476 (4%)
Strand=Plus/Minus
Query 46974 TTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACCA 47033
|| || || ||||||| ||| | | | || | || || || | || |||||||||
Sbjct 2237109 TTGTCAACTGTAAACTGAATGGCAGCAGCGGCAGCTTGAGTACGCAGGTAGTACATACCA 2237050
Query 47034 GTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGT 47093
|||||||| ||| |||| |||||||| ||||| || || |||||| | | ||
Sbjct 2237049 GTCTTTAATCCTTTCTTCCAACCATAGAAGTGCATGCTGGTCAATTTACCCATAGTTGGA 2236990
Query 47094 TCTGAAATA---TGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCT 47150
|| || ||||| || | || ||| || || ||| | || ||| || ||
Sbjct 2236989 ---GACATCAGGTGAATGTTCAACGACTGAGATTGGTCGATATAGGCTGATCTGTCCGCA 2236933
Query 47151 GCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATG 47210
|||||||| | ||| | |||| | ||||||||| ||||| ||||||| ||| |
Sbjct 2236932 GCCATATCAATGATAGTCTTTTGAGATATCTCCCAAACTGTCTTATAAAGGCCTTTGAGT 2236873
Query 47211 TCTTCTGGGAGATTAGT---ATTTTGAATAGATCCTCCgttttctataat--tttgtttt 47265
| || || | || | ||||||||| || || ||| ||| ||| | || |||
Sbjct 2236872 TGCTCAGGAATGTTGGGCAAATTTTGAATGGAGCC---GTTGTCTGAAATGATATGATTT 2236816
Query 47266 ttaat-tcatttgaccaaagttttcgttcagtta-atgtttttaaAAGATGAGGATTAAC 47323
|| || | || |||||| || || || | ||| | |||||||||
Sbjct 2236815 TTCATGTTATCGTCCCAAAGACCCAAATCCACTAGATCACGCAATAAG-TAAGGATTAAC 2236757
Query 47324 AATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTAT 47383
|||||| |||||||||| || ||| | ||| || || ||| ||||| ||||| |
Sbjct 2236756 AATTTGGAATTCTCCAGCTAATACACGACGTGAGTAGATGTTAGAAGTATAAGGTTCGAA 2236697
Query 47384 AGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTA 47439
| | || || | || ||||| || | |||||| || |||||||| | ||||||||
Sbjct 2236696 ACACTCGTTGTAACCCAAAATCTGGGAAGTTGAAGCAGTAGGCATAGGTGCAACTA 2236641
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562108722710040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |