Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F001708105.1_202016-08-12] 11 sequences; 9,597,535 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2 311 1e-79 seq1 210 2e-49 >seq2 Length=2687137 Score = 311 bits (344), Expect = 1e-79 Identities = 614/898 (68%), Gaps = 13/898 (1%) Strand=Plus/Plus Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 ||||| || || | |||||| ||||| ||||| || || || || | || || || Sbjct 442716 TTTTGGTAATCAGAAACTCTCTTTTCGAAGAAGTTGGTCTTACCAGCCAAAGAAATGTTC 442775 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789 ||||| |||||||||||||| | || || || | ||||||| || | ||| ||| Sbjct 442776 TCCATGAAATCAAATGGATTGGTGACGTTGTACACTTTTTTGTTGCCCAGAGCTACCAGT 442835 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849 |||||||| || || || | || ||| | ||||| || |||||||| | || Sbjct 442836 AGTCTATCAGCAACGAACTCAACATACTGGCACATCAAGCTGCAGTTCATTCCCAGCAAG 442895 Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATA 18909 |||||| || |||||||| | || || ||| || | || ||||||| ||||| Sbjct 442896 GAAACAGGAAGAGCATCTGTGAAGTATCTTTTTTCAATCTCGACAGCCTCTGTAATAATC 442955 Query 18910 GATACAACTCTATCTTCATTAGGAGGGTA-TAGAAGATGTTTAAACATCAAACATGCAAA 18968 | |||| | || ||| | | || | ||| || || | ||| || ||||| Sbjct 442956 TTTTCAACGATTTCCTCACTGGCTCTGTTGTTCAAG-TGAGAGAATAGCAAGCAAGCAAA 443014 Query 18969 ATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCAT 19028 || |||| ||| || ||||| | || | ||||| || || || ||||| ||||| Sbjct 443015 GTCGGTGTGTAATCCTTCATCTCTGCAAATAAGCTCATTGGAGAAGGTCAAACCTGGCAT 443074 Query 19029 CAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTC 19088 || ||||| ||||| |||||||| |||||||| || || || |||||||| |||||||| Sbjct 443075 AAGACCTCTCTTTTTCAACCAGAAGATAGAAGCGAAAGAGCCCGAAAAGAAGATACCTTC 443134 Query 19089 TACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTT 19148 || || || || ||||| | | ||| | | |||||| | || ||||||| | Sbjct 443135 AACAGCAGCGAAGGCAACCAAACGTTCAGCGAACAAAGCATCGTCATCGGCAATCCATCT 443194 Query 19149 CAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATA 19208 || ||||| |||||||| | ||| | |||||| || ||||| || | ||| || | | | Sbjct 443195 CATGGCCCAGTCAGCCTTTTCTTTGATACATGGAATGGTCTCGATGGCATTGAACA-AGA 443253 Query 19209 CATACGC--TCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAA 19266 || || || | || |||||| | || | ||| ||||| || ||| |||| || Sbjct 443254 -ATTCGGATTCTTTTGGATCTTTGATGTAAGTATCAATCAACAATGAGTAAGTTTCGGAG 443312 Query 19267 TGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACT 19326 || || || || || || ||||| |||||||||||| ||||||| | | || || Sbjct 443313 TGGATGTTCTCCATCATGATTTGAAAACCGTAAAAACATTTTGCTTCGGGAAGTTGAACC 443372 Query 19327 TCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAAT 19386 ||| | || |||| |||||||||||||| || || |||||| || |||||||| Sbjct 443373 TCAGCGCTGAAGTTTTCCACCAAATTTTCATTGACAATACCATCAGAGGCAGCAAAAAAG 443432 Query 19387 GCTAATACATGTTTA-ATAAAATGTTTTTCATCTGAGGTTAAT----GTATTCCAATCAT 19441 || || | | | | ||||||| || |||| || ||| || ||||||| |||| Sbjct 443433 GC-AAGAACTCTAGAGATAAAATACTTCTCAT-TGTCGTTCATACGATTATTCCAGTCAT 443490 Query 19442 TAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTAT 19501 | ||| || || |||| ||| || | |||||||| ||||| || || | ||| | Sbjct 443491 GCAAATCCTTTCCCAAGTCTATTTCCTCGGCAGTCCAAAAGGAAGCTTCGGCCTGTTTGT 443550 Query 19502 ACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATTTTC 19559 |||| | ||| || || |||||| | ||| || | ||| || | | ||||||||| Sbjct 443551 ACATTTGCCAGATGTCGTGATATTTCAAAGGGAAGAGAACGAAACGACGTTTATTTTC 443608 >seq1 Length=3325186 Score = 210 bits (232), Expect = 2e-49 Identities = 614/939 (65%), Gaps = 11/939 (1%) Strand=Plus/Minus Query 47876 AAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTAT 47935 ||| || ||||| || | ||||| ||||| || | ||| || ||| | | || Sbjct 2236192 AAGAGCAATAGAAGCCAAGTTACAGACAGCAGTTTCTTCTGGGGAAGAATACTCAACAAT 2236133 Query 47936 TTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTT 47995 ||| ||| || ||| |||| || |||||| || | || || | ||||| Sbjct 2236132 CTCACAACAAAGGTTAGAGGATTTAATGACACCCAAGTTCTTCTGGTTGGTTTTCTTGTT 2236073 Query 47996 ACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGA 48055 ||| || ||||| || | ||| || || || || |||||| |||| | || | ||| | Sbjct 2236072 ACAAGCATCCTTATACAACATGAATGGAGTACCGGTTTCTGTCTGTGCCTCGAGGATGGC 2236013 Query 48056 TTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTAT--TTA 48113 | ||||| | || || || ||| | | || | ||||||| || Sbjct 2236012 GTACCAAAGCTTTTGGGCTTTGATGGTTTGTCTTCCACGACCTTCCTTTTCGTATCTTTC 2235953 Query 48114 GTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGA 48173 ||| | |||| ||||||||| || || || | | | |||||| ||| | ||| Sbjct 2235952 GTACAGTTCTTC--AAATTCATCGCCGTAGACGTCGGCAAGGCCAGGAGCCTCACTTGGA 2235895 Query 48174 CACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAA 48233 | | || | ||| || ||| | || || || |||| || | ||| || ||||| Sbjct 2235894 GAGAACAGGGTCCATTCGCCATTCTGTTCGACCCTTTTCATGAACAGATCAGGGATCCAT 2235835 Query 48234 AGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCA 48293 ||||| |||| ||| || | ||| | ||| || || ||| ||| | || ||| Sbjct 2235834 AGAGCCGGGAATAGATCTCTGGCTCTGATTTCCTCTTTTCCATGGTTCTTACGAATGTCA 2235775 Query 48294 AGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGT 48353 | |||| | | || || |||||||||||||| || || | || | | |||| || || Sbjct 2235774 ATAAAGGCGAAGATGTCCGCATGCCATGGTTCCAAGTACAAAGCAAATGCACCAGGGCGC 2235715 Query 48354 TTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACA 48413 || ||||| |||||||| | ||| | || || ||||| ||||||| | |||||| | | Sbjct 2235714 TTGTTACCACCTTGATCAACATAACGAGCGGTGTTGTTGAAAACTCTCACCATTGGAATA 2235655 Query 48414 ATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTA 48473 ||||| || || |||| || || || | ||| || ||| | || | |||||| | Sbjct 2235654 ATACCGTTCGAAGTACCGTTAGTACCAGCAATGTAGGATCCTGTGGCACGAATATTATGA 2235595 Query 48474 AT-TGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATC 48532 || || || ||| || ||||| || |||| || |||| |||||| || | ||||| Sbjct 2235594 ATGTGCAA-ACCAATTCCACCAGCAGTTTTGGAAATTAAAGCACATTCCTTCAAAGTATC 2235536 Query 48533 ATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGG 48592 |||||| ||||| || ||||| ||| | || ||||| |||||||| || Sbjct 2235535 ATAAATACCTTCAATCGAGTCATCCCGCATGGCAACTAAGAAACATGACGACATTTGTGG 2235476 Query 48593 ATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCT--CTGAT 48650 ||| || || | ||||| | || ||||| || ||| | || | |||| || || Sbjct 2235475 GTGAGGGGTACCAGCGTTAAACAGAGTAGGAGAGGCGTGAGTGAAATACTTCTGACTCAT 2235416 Query 48651 AACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACA 48710 || | || || ||||||||||| | || || ||| ||||| |||| ||| Sbjct 2235415 AA--AGTTGTAGGTTTCAATAACCCTTGCAATGTCATCACCATGAATACCGATAGCGACA 2235358 Query 48711 CGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGAT 48770 ||||| | | | |||||| | ||| ||| ||| ||| ||| ||| ||| || ||| Sbjct 2235357 CGCATAATTAAGTGTTGAGGACGTTCTGCAACATTGCCATTAATTCTCAGAAGGTAAGAT 2235298 Query 48771 TTTTCCAATGTTTTAAAACCAAAATAGTTGTA-TGAAAA 48808 ||||||| || || || ||||| || || || |||||| Sbjct 2235297 CTTTCCAAGGTCTTGAATCCAAAGTAATTATACTGAAAA 2235259 Score = 107 bits (118), Expect = 2e-18 Identities = 314/476 (66%), Gaps = 17/476 (4%) Strand=Plus/Minus Query 46974 TTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACCA 47033 || || || ||||||| ||| | | | || | || || || | || ||||||||| Sbjct 2237109 TTGTCAACTGTAAACTGAATGGCAGCAGCGGCAGCTTGAGTACGCAGGTAGTACATACCA 2237050 Query 47034 GTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGT 47093 |||||||| ||| |||| |||||||| ||||| || || |||||| | | || Sbjct 2237049 GTCTTTAATCCTTTCTTCCAACCATAGAAGTGCATGCTGGTCAATTTACCCATAGTTGGA 2236990 Query 47094 TCTGAAATA---TGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCT 47150 || || ||||| || | || ||| || || ||| | || ||| || || Sbjct 2236989 ---GACATCAGGTGAATGTTCAACGACTGAGATTGGTCGATATAGGCTGATCTGTCCGCA 2236933 Query 47151 GCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATG 47210 |||||||| | ||| | |||| | ||||||||| ||||| ||||||| ||| | Sbjct 2236932 GCCATATCAATGATAGTCTTTTGAGATATCTCCCAAACTGTCTTATAAAGGCCTTTGAGT 2236873 Query 47211 TCTTCTGGGAGATTAGT---ATTTTGAATAGATCCTCCgttttctataat--tttgtttt 47265 | || || | || | ||||||||| || || ||| ||| ||| | || ||| Sbjct 2236872 TGCTCAGGAATGTTGGGCAAATTTTGAATGGAGCC---GTTGTCTGAAATGATATGATTT 2236816 Query 47266 ttaat-tcatttgaccaaagttttcgttcagtta-atgtttttaaAAGATGAGGATTAAC 47323 || || | || |||||| || || || | ||| | ||||||||| Sbjct 2236815 TTCATGTTATCGTCCCAAAGACCCAAATCCACTAGATCACGCAATAAG-TAAGGATTAAC 2236757 Query 47324 AATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTAT 47383 |||||| |||||||||| || ||| | ||| || || ||| ||||| ||||| | Sbjct 2236756 AATTTGGAATTCTCCAGCTAATACACGACGTGAGTAGATGTTAGAAGTATAAGGTTCGAA 2236697 Query 47384 AGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTA 47439 | | || || | || ||||| || | |||||| || |||||||| | |||||||| Sbjct 2236696 ACACTCGTTGTAACCCAAAATCTGGGAAGTTGAAGCAGTAGGCATAGGTGCAACTA 2236641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108722710040