Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F001708105.1_202016-08-12] 11 sequences; 9,597,535 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq1 129 3e-25 seq4 105 3e-18 >seq1 Length=3325186 Score = 129 bits (142), Expect = 3e-25 Identities = 341/512 (67%), Gaps = 14/512 (3%) Strand=Plus/Minus Query 25890 TTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGAA 25949 ||||| |||| | ||| || |||| || || || | | ||| || | ||| || | Sbjct 2235899 TTGGAGAGAACAGGGTCCATTCGCCATTCTGTTCGACCCTTTTCATGAACAGATCAGGGA 2235840 Query 25950 TCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTA 26009 |||| | || |||| |||||| ||||| ||||| |||||||| || ||||| | Sbjct 2235839 TCCATAGAGCCGGGAATAGATCTCTGGCTCTGATTTCCTCTTTTCCATGGTTCTTACGAA 2235780 Query 26010 GATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCTT 26069 || | || | || || || | ||||||||||| || || | |||||| ||| Sbjct 2235779 TGTCAATAAAGGCGAAGATGTCCGCATGCCATGGTTCCAAGTACAAAGCAAATGCACCAG 2235720 Query 26070 TTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATTG 26129 | || ||||||||||| || || | || || | ||||||||| ||| ||||| Sbjct 2235719 GGCGCTTGTTACCACCTTGATCAACATAACGAGCGGTGTTGTTGAAAACTCTCACCATTG 2235660 Query 26130 GAACTAATCCAGTTGAAAAT-CCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAATA 26188 ||| |||| | ||| || | ||||| || | | ||| | ||||||||| | | |||| Sbjct 2235659 GAA-TAATACCGTTCGAAGTACCGTTAGTACCAGCAATGTAGGATCCTGTGGCACGAATA 2235601 Query 26189 TCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATC--TGAAA 26246 | ||| || | ||| ||||||||||| ||| ||||| ||||| || | ||| Sbjct 2235600 TTATGAATGTGCAAACCAATTCCACCAGCAGTTTTGGAAATTAAAGCACATTCCTTCAAA 2235541 Query 26247 CTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGATA 26306 ||||| |||| |||| || ||| | ||| | | ||| ||||| || || | Sbjct 2235540 --GTATCATAAATACCTTCAATCGAGTCATCCCGCATGGCAACTAAGAAACATGACGACA 2235483 Query 26307 ATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAATATCCTT 26366 ||| | |||| || || | ||||| | || || | || ||||| |||| ||| Sbjct 2235482 TTTGTGGGTGAGGGGTACCAGCGTTAAACAGAGTAGGAGAGGCGTGAGTGAAATA--CTT 2235425 Query 26367 C--ACTC--AAAGCTGTATAAGTTTCAAGAAC 26394 | |||| |||| || || ||||||| ||| Sbjct 2235424 CTGACTCATAAAGTTG--TAGGTTTCAATAAC 2235395 >seq4 Length=1577441 Score = 105 bits (116), Expect = 3e-18 Identities = 158/223 (71%), Gaps = 10/223 (4%) Strand=Plus/Plus Query 25922 TCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTC 25981 || ||||| |||||||| | ||| |||||||| | || || ||||| ||||| ||||| Sbjct 405433 TCGACTTTTTCCATAAACAGATCGGGAATCCATAAAGCGTAGAATAAGTCTCTAGCTCTG 405492 Query 25982 ATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCAT 26041 || || || || ||||||||||| | | | || |||||||| | || |||||| Sbjct 405493 ATCTCCTCCTTGCCGTGATTCTTCCTCAAGTTCAATAAATCAAACACTTCCTCGTGCCAG 405552 Query 26042 GGTTCTAAATAGATAGCAAA---ACT--ACCTTTTCTTTTTCCTCCACCTTGATCTACGT 26096 || |||||||| || ||||| ||| ||| || || | || || | || | Sbjct 405553 GGCTCTAAATAAATTGCAAACGCACTGGGCCTCTTATTGGAC-----CCCTGTTGGACAT 405607 Query 26097 ATCTTGCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCC 26139 | |||||||||||||| || ||||| | | |||||| | ||| Sbjct 405608 ACCTTGCAGTTTCATTTAAGACTTTGATTAATGGAACAATTCC 405650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253039966076825