Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F001708105.1_202016-08-12]
11 sequences; 9,597,535 total letters
Query= NC_020842.1
Length=79114
Score E
Sequences producing significant alignments: (Bits) Value
seq1 129 3e-25
seq4 105 3e-18
>seq1
Length=3325186
Score = 129 bits (142), Expect = 3e-25
Identities = 341/512 (67%), Gaps = 14/512 (3%)
Strand=Plus/Minus
Query 25890 TTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGAA 25949
||||| |||| | ||| || |||| || || || | | ||| || | ||| || |
Sbjct 2235899 TTGGAGAGAACAGGGTCCATTCGCCATTCTGTTCGACCCTTTTCATGAACAGATCAGGGA 2235840
Query 25950 TCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTA 26009
|||| | || |||| |||||| ||||| ||||| |||||||| || ||||| |
Sbjct 2235839 TCCATAGAGCCGGGAATAGATCTCTGGCTCTGATTTCCTCTTTTCCATGGTTCTTACGAA 2235780
Query 26010 GATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCTT 26069
|| | || | || || || | ||||||||||| || || | |||||| |||
Sbjct 2235779 TGTCAATAAAGGCGAAGATGTCCGCATGCCATGGTTCCAAGTACAAAGCAAATGCACCAG 2235720
Query 26070 TTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATTG 26129
| || ||||||||||| || || | || || | ||||||||| ||| |||||
Sbjct 2235719 GGCGCTTGTTACCACCTTGATCAACATAACGAGCGGTGTTGTTGAAAACTCTCACCATTG 2235660
Query 26130 GAACTAATCCAGTTGAAAAT-CCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAATA 26188
||| |||| | ||| || | ||||| || | | ||| | ||||||||| | | ||||
Sbjct 2235659 GAA-TAATACCGTTCGAAGTACCGTTAGTACCAGCAATGTAGGATCCTGTGGCACGAATA 2235601
Query 26189 TCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATC--TGAAA 26246
| ||| || | ||| ||||||||||| ||| ||||| ||||| || | |||
Sbjct 2235600 TTATGAATGTGCAAACCAATTCCACCAGCAGTTTTGGAAATTAAAGCACATTCCTTCAAA 2235541
Query 26247 CTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGATA 26306
||||| |||| |||| || ||| | ||| | | ||| ||||| || || |
Sbjct 2235540 --GTATCATAAATACCTTCAATCGAGTCATCCCGCATGGCAACTAAGAAACATGACGACA 2235483
Query 26307 ATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAATATCCTT 26366
||| | |||| || || | ||||| | || || | || ||||| |||| |||
Sbjct 2235482 TTTGTGGGTGAGGGGTACCAGCGTTAAACAGAGTAGGAGAGGCGTGAGTGAAATA--CTT 2235425
Query 26367 C--ACTC--AAAGCTGTATAAGTTTCAAGAAC 26394
| |||| |||| || || ||||||| |||
Sbjct 2235424 CTGACTCATAAAGTTG--TAGGTTTCAATAAC 2235395
>seq4
Length=1577441
Score = 105 bits (116), Expect = 3e-18
Identities = 158/223 (71%), Gaps = 10/223 (4%)
Strand=Plus/Plus
Query 25922 TCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTC 25981
|| ||||| |||||||| | ||| |||||||| | || || ||||| ||||| |||||
Sbjct 405433 TCGACTTTTTCCATAAACAGATCGGGAATCCATAAAGCGTAGAATAAGTCTCTAGCTCTG 405492
Query 25982 ATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCAT 26041
|| || || || ||||||||||| | | | || |||||||| | || ||||||
Sbjct 405493 ATCTCCTCCTTGCCGTGATTCTTCCTCAAGTTCAATAAATCAAACACTTCCTCGTGCCAG 405552
Query 26042 GGTTCTAAATAGATAGCAAA---ACT--ACCTTTTCTTTTTCCTCCACCTTGATCTACGT 26096
|| |||||||| || ||||| ||| ||| || || | || || | || |
Sbjct 405553 GGCTCTAAATAAATTGCAAACGCACTGGGCCTCTTATTGGAC-----CCCTGTTGGACAT 405607
Query 26097 ATCTTGCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCC 26139
| |||||||||||||| || ||||| | | |||||| | |||
Sbjct 405608 ACCTTGCAGTTTCATTTAAGACTTTGATTAATGGAACAATTCC 405650
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 253039966076825
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |