Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F001708105.1_202016-08-12]
11 sequences; 9,597,535 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq2 233 3e-56
seq4 91.5 2e-13
>seq2
Length=2687137
Score = 233 bits (258), Expect = 3e-56
Identities = 578/861 (67%), Gaps = 34/861 (4%)
Strand=Plus/Plus
Query 17861 GCTTTTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATT 17920
|| |||| ||| || ||| | || |||||||| || ||||| || |||| || ||
Sbjct 442713 GCCTTTTGGTAATCAGAAACTCTCTTTTCGAAGAAGTTGGTCTTACCAGCCAAAGAAATG 442772
Query 17921 AAATTCATAAAATCAAATGGATTAGTG--GTTTTATAATATTTTTCTTGTATTAATTCGT 17978
| ||| |||||||||||||| ||| ||| || | | ||||| ||| | |
Sbjct 442773 TTCTCCATGAAATCAAATGGATTGGTGACGTTGTACACT-TTTTTGTTGCCCAGAG-CTA 442830
Query 17979 ATAATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTA 18038
| || |||||| || || || || ||||| || ||||||| ||| ||||| || |
Sbjct 442831 CCAGTAGTCTATCAGCAACGAACTCAACATACTGGCACATCAAGCTGCAGTTCATTCCCA 442890
Query 18039 GTAGTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTA 18098
| | | ||| |||||||| | | || ||| || ||||| |||| |||| | |
Sbjct 442891 GCAAGGAAACAGGAAGAGCATCTGTGAAGTATCTTTTTTCAATCTCGACAGCCTCTGTAA 442950
Query 18099 TTATGTTTATTACCCTAGATTT------TGGCAATTTATTAATTATGTGATTATAATATA 18152
| || ||| || ||||| |||| | | || | | |||| | |||
Sbjct 442951 TAATCTTTTCAAC----GATTTCCTCACTGGC--TCTGTTGTTCAAGTGAG---AGAATA 443001
Query 18153 ATAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACG 18212
|| || ||||| || |||||||| |||||||||||| | || | || || || |
Sbjct 443002 GCAAGCAAGCAAAGTCGGTGTGTAATCCTTCATCTCTGCAAATAAGCTCATTGGAGAAGG 443061
Query 18213 TTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAA 18272
| || || ||||| | |||||| ||||| | ||| || || || |||||| | ||||
Sbjct 443062 TCAAACCTGGCATAAGACCTCTCTTTTTCAACCAGAAGATAGAAGCGAAAGAGCCCGAAA 443121
Query 18273 AGAATATACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAA-ACTGTAT--TTA 18328
|||| ||||| ||||| ||| ||||| || | || | |||||| || | | || | |
Sbjct 443122 AGAAGATACCTTCAACAGCA-GCGAAGGCAACCAAACGTTCAGCGAACAAAGCATCGTCA 443180
Query 18329 TTGCTCAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCT 18388
| | || |||||| | ||||| || | | ||||| || || ||||
Sbjct 443181 TCGG-CA--ATCCATCTCATGGCCCAGTCAGCCTTTTCTTTGATACATGGAATGGTCTCG 443237
Query 18389 ATAGCATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAA 18448
|| ||||| ||||| || |||||| | |||||| || ||||| || || |||||
Sbjct 443238 ATGGCATTGAACAAGAATTCGGATTCTTTTGGATCTTTGATGTAAGTATCAATCAACAAT 443297
Query 18449 GAATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCC 18508
|| || |||| || || ||| | ||||| || ||||||| ||||| || | ||
Sbjct 443298 GAGTAAGTTTCGGAGTGGATGTTCTCCATCATGATTTGAAAACCGTAAAAACATTTTGCT 443357
Query 18509 TCGGGATATTGAATCTC-GCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTC 18567
|||||| ||||| ||| || | || | |||| |||||||| ||||| || ||||| ||
Sbjct 443358 TCGGGAAGTTGAACCTCAGCGCTGAAGT-TTTCCACCAAATTTTCATTGACAATACCATC 443416
Query 18568 AGCAGATGCGAAAAATGCCAAAACATATTTA-ATGAAATGTTTTTCATTATCCTTGA--- 18623
|| | || ||||| || | ||| | | | || |||| || ||||| || || |
Sbjct 443417 AGAGGCAGCAAAAAAGGCAAGAAC-TCTAGAGATAAAATACTTCTCATTGTCGTTCATAC 443475
Query 18624 GATTGTTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATG 18683
|||| ||||| |||| | ||| ||| | || | ||| || | |||||||| || |
Sbjct 443476 GATTATTCCAGTCATGCAAATCCTTTCCCAAGTCTATTTCCTCGGCAGTCCAAAAGGAAG 443535
Query 18684 ATTCGGCCTGTTTGTACATTT 18704
||||||||||||||||||||
Sbjct 443536 CTTCGGCCTGTTTGTACATTT 443556
>seq4
Length=1577441
Score = 91.5 bits (100), Expect = 2e-13
Identities = 159/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| || | || || || || || || |||||||| | || || || ||
Sbjct 1240161 ATGCAAATCTTCGTCAAGACCTTAACCGGCAAGACTATTACCCTCGAGGTGGAGTCATCA 1240102
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | ||| ||||| || ||| || || || || ||||| || ||||| || ||
Sbjct 1240101 GACACCATTGACAACGTCAAGTCTAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCAG 1240042
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
||| | || || | ||| |||||||| | ||||| ||||||| | || || |||||
Sbjct 1240041 CAACGTTTAATCTTTGCAGGTAAGCAATTGGAAGACGGCAGAACTCTTTCTGACTATAAC 1239982
Query 156003 ATATCCAAAG-AGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050
|| || |||| | | || ||||| || || | ||||||||||| |||
Sbjct 1239981 AT-TCAAAAGGAATCCACTCTTCACTTGGTCCTGAGATTAAGAGGTGGT 1239934
Score = 91.5 bits (100), Expect = 2e-13
Identities = 159/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| || | || || || || || || |||||||| | || || || ||
Sbjct 1240389 ATGCAAATCTTCGTCAAGACCTTAACCGGCAAGACTATTACCCTCGAGGTGGAGTCATCA 1240330
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | ||| ||||| || ||| || || || || ||||| || ||||| || ||
Sbjct 1240329 GACACCATTGACAACGTCAAGTCTAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCAG 1240270
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
||| | || || | ||| |||||||| | ||||| ||||||| | || || |||||
Sbjct 1240269 CAACGTTTAATCTTTGCAGGTAAGCAATTGGAAGACGGCAGAACTCTTTCTGACTATAAC 1240210
Query 156003 ATATCCAAAG-AGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050
|| || |||| | | || ||||| || || | ||||||||||| |||
Sbjct 1240209 AT-TCAAAAGGAATCCACTCTTCACTTGGTCCTGAGATTAAGAGGTGGT 1240162
Score = 91.5 bits (100), Expect = 2e-13
Identities = 161/232 (69%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879
|||||||| || ||| | ||||| | || || || ||||| || | || || ||
Sbjct 1240620 AAAATGCAGATTTTTGTGAAAACCCTAACAGGTAAGACTATCACTCTTGAGGTGGAGTCA 1240561
Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939
|| || | ||| ||||| || ||| || || || || ||||| || ||||| ||
Sbjct 1240560 TCAGACACCATTGACAACGTCAAGTCTAAGATTCAGGACAAGGAAGGTATTCCTCCTGAT 1240501
Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999
|| ||| | || || | ||| |||||||| | ||||| ||||||| | || || |||
Sbjct 1240500 CAGCAACGTTTAATCTTTGCAGGTAAGCAATTGGAAGACGGCAGAACTCTTTCTGACTAT 1240441
Query 156000 AATATATCCAAAG-AGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050
|| || || |||| | | || ||||| || || | ||||||||||| |||
Sbjct 1240440 AACAT-TCAAAAGGAATCCACTCTTCACTTGGTCCTGAGATTAAGAGGTGGT 1240390
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731871899367600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |