Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F001708105.1_202016-08-12] 11 sequences; 9,597,535 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq2 233 3e-56 seq4 91.5 2e-13 >seq2 Length=2687137 Score = 233 bits (258), Expect = 3e-56 Identities = 578/861 (67%), Gaps = 34/861 (4%) Strand=Plus/Plus Query 17861 GCTTTTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATT 17920 || |||| ||| || ||| | || |||||||| || ||||| || |||| || || Sbjct 442713 GCCTTTTGGTAATCAGAAACTCTCTTTTCGAAGAAGTTGGTCTTACCAGCCAAAGAAATG 442772 Query 17921 AAATTCATAAAATCAAATGGATTAGTG--GTTTTATAATATTTTTCTTGTATTAATTCGT 17978 | ||| |||||||||||||| ||| ||| || | | ||||| ||| | | Sbjct 442773 TTCTCCATGAAATCAAATGGATTGGTGACGTTGTACACT-TTTTTGTTGCCCAGAG-CTA 442830 Query 17979 ATAATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTA 18038 | || |||||| || || || || ||||| || ||||||| ||| ||||| || | Sbjct 442831 CCAGTAGTCTATCAGCAACGAACTCAACATACTGGCACATCAAGCTGCAGTTCATTCCCA 442890 Query 18039 GTAGTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTA 18098 | | | ||| |||||||| | | || ||| || ||||| |||| |||| | | Sbjct 442891 GCAAGGAAACAGGAAGAGCATCTGTGAAGTATCTTTTTTCAATCTCGACAGCCTCTGTAA 442950 Query 18099 TTATGTTTATTACCCTAGATTT------TGGCAATTTATTAATTATGTGATTATAATATA 18152 | || ||| || ||||| |||| | | || | | |||| | ||| Sbjct 442951 TAATCTTTTCAAC----GATTTCCTCACTGGC--TCTGTTGTTCAAGTGAG---AGAATA 443001 Query 18153 ATAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACG 18212 || || ||||| || |||||||| |||||||||||| | || | || || || | Sbjct 443002 GCAAGCAAGCAAAGTCGGTGTGTAATCCTTCATCTCTGCAAATAAGCTCATTGGAGAAGG 443061 Query 18213 TTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAA 18272 | || || ||||| | |||||| ||||| | ||| || || || |||||| | |||| Sbjct 443062 TCAAACCTGGCATAAGACCTCTCTTTTTCAACCAGAAGATAGAAGCGAAAGAGCCCGAAA 443121 Query 18273 AGAATATACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAA-ACTGTAT--TTA 18328 |||| ||||| ||||| ||| ||||| || | || | |||||| || | | || | | Sbjct 443122 AGAAGATACCTTCAACAGCA-GCGAAGGCAACCAAACGTTCAGCGAACAAAGCATCGTCA 443180 Query 18329 TTGCTCAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCT 18388 | | || |||||| | ||||| || | | ||||| || || |||| Sbjct 443181 TCGG-CA--ATCCATCTCATGGCCCAGTCAGCCTTTTCTTTGATACATGGAATGGTCTCG 443237 Query 18389 ATAGCATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAA 18448 || ||||| ||||| || |||||| | |||||| || ||||| || || ||||| Sbjct 443238 ATGGCATTGAACAAGAATTCGGATTCTTTTGGATCTTTGATGTAAGTATCAATCAACAAT 443297 Query 18449 GAATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCC 18508 || || |||| || || ||| | ||||| || ||||||| ||||| || | || Sbjct 443298 GAGTAAGTTTCGGAGTGGATGTTCTCCATCATGATTTGAAAACCGTAAAAACATTTTGCT 443357 Query 18509 TCGGGATATTGAATCTC-GCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTC 18567 |||||| ||||| ||| || | || | |||| |||||||| ||||| || ||||| || Sbjct 443358 TCGGGAAGTTGAACCTCAGCGCTGAAGT-TTTCCACCAAATTTTCATTGACAATACCATC 443416 Query 18568 AGCAGATGCGAAAAATGCCAAAACATATTTA-ATGAAATGTTTTTCATTATCCTTGA--- 18623 || | || ||||| || | ||| | | | || |||| || ||||| || || | Sbjct 443417 AGAGGCAGCAAAAAAGGCAAGAAC-TCTAGAGATAAAATACTTCTCATTGTCGTTCATAC 443475 Query 18624 GATTGTTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATG 18683 |||| ||||| |||| | ||| ||| | || | ||| || | |||||||| || | Sbjct 443476 GATTATTCCAGTCATGCAAATCCTTTCCCAAGTCTATTTCCTCGGCAGTCCAAAAGGAAG 443535 Query 18684 ATTCGGCCTGTTTGTACATTT 18704 |||||||||||||||||||| Sbjct 443536 CTTCGGCCTGTTTGTACATTT 443556 >seq4 Length=1577441 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || || || || || |||||||| | || || || || Sbjct 1240161 ATGCAAATCTTCGTCAAGACCTTAACCGGCAAGACTATTACCCTCGAGGTGGAGTCATCA 1240102 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||| || ||| || || || || ||||| || ||||| || || Sbjct 1240101 GACACCATTGACAACGTCAAGTCTAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCAG 1240042 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | || || | ||| |||||||| | ||||| ||||||| | || || ||||| Sbjct 1240041 CAACGTTTAATCTTTGCAGGTAAGCAATTGGAAGACGGCAGAACTCTTTCTGACTATAAC 1239982 Query 156003 ATATCCAAAG-AGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || || |||| | | || ||||| || || | ||||||||||| ||| Sbjct 1239981 AT-TCAAAAGGAATCCACTCTTCACTTGGTCCTGAGATTAAGAGGTGGT 1239934 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || || || || || |||||||| | || || || || Sbjct 1240389 ATGCAAATCTTCGTCAAGACCTTAACCGGCAAGACTATTACCCTCGAGGTGGAGTCATCA 1240330 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||| || ||| || || || || ||||| || ||||| || || Sbjct 1240329 GACACCATTGACAACGTCAAGTCTAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCAG 1240270 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | || || | ||| |||||||| | ||||| ||||||| | || || ||||| Sbjct 1240269 CAACGTTTAATCTTTGCAGGTAAGCAATTGGAAGACGGCAGAACTCTTTCTGACTATAAC 1240210 Query 156003 ATATCCAAAG-AGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || || |||| | | || ||||| || || | ||||||||||| ||| Sbjct 1240209 AT-TCAAAAGGAATCCACTCTTCACTTGGTCCTGAGATTAAGAGGTGGT 1240162 Score = 91.5 bits (100), Expect = 2e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 |||||||| || ||| | ||||| | || || || ||||| || | || || || Sbjct 1240620 AAAATGCAGATTTTTGTGAAAACCCTAACAGGTAAGACTATCACTCTTGAGGTGGAGTCA 1240561 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || || | ||| ||||| || ||| || || || || ||||| || ||||| || Sbjct 1240560 TCAGACACCATTGACAACGTCAAGTCTAAGATTCAGGACAAGGAAGGTATTCCTCCTGAT 1240501 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 || ||| | || || | ||| |||||||| | ||||| ||||||| | || || ||| Sbjct 1240500 CAGCAACGTTTAATCTTTGCAGGTAAGCAATTGGAAGACGGCAGAACTCTTTCTGACTAT 1240441 Query 156000 AATATATCCAAAG-AGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || || || |||| | | || ||||| || || | ||||||||||| ||| Sbjct 1240440 AACAT-TCAAAAGGAATCCACTCTTCACTTGGTCCTGAGATTAAGAGGTGGT 1240390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731871899367600