Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F001708105.1_202016-08-12]
11 sequences; 9,597,535 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq4 113 9e-20
seq2 113 9e-20
seq3 93.3 8e-14
>seq4
Length=1577441
Score = 113 bits (124), Expect = 9e-20
Identities = 167/234 (71%), Gaps = 2/234 (1%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCT-CTTTAGAGATATTATAATC 192365
||||||||||| | | | || || || | ||| | | |||| || || ||||| ||
Sbjct 1240388 ATACCACCTCTTAATCTCAGGACCAAGTGAAGAGTGGATTCCTTTTGA-ATGTTATAGTC 1240446
Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425
||| | |||| | || |||||||| ||||| ||||||||||| | || ||||||||
Sbjct 1240447 AGAAAGAGTTCTGCCGTCTTCCAATTGCTTACCTGCAAAGATTAAACGTTGCTGATCAGG 1240506
Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485
|| || ||||| || || || || ||| || || || || | ||||| || ||
Sbjct 1240507 AGGAATACCTTCCTTGTCCTGAATCTTAGACTTGACGTTGTCAATGGTGTCTGATGACTC 1240566
Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
|| || ||||| || || ||||| |||| ||||| | ||| |||||||||||
Sbjct 1240567 CACCTCAAGAGTGATAGTCTTACCTGTTAGGGTTTTCACAAAAATCTGCATTTT 1240620
Score = 100 bits (110), Expect = 6e-16
Identities = 161/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367
|||||| || | | ||| ||||| || | ||| | || ||| || || ||||| ||||
Sbjct 1239706 ACCACCCCTCAATCTTAAAACTAAGTGAAGAGTGGATTCCTTTTGA-ATGTTATAGTCAG 1239764
Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427
| | |||| | || |||||||| ||||| ||||||||||| | || |||||||| |
Sbjct 1239765 AAAGAGTTCTGCCGTCTTCCAATTGCTTACCTGCAAAGATTAAACGTTGCTGATCAGGAG 1239824
Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487
| || ||||| || || || || ||| || || || || | ||||| || || |
Sbjct 1239825 GAATACCTTCCTTGTCCTGAATCTTAGACTTGACGTTGTCAATGGTGTCTGATGACTCCA 1239884
Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
| || || ||||| || || || ||||| || || | || || |||||
Sbjct 1239885 CCTCGAGGGTAATAGTCTTGCCGGTTAAGGTCTTGACGAAGATTTGCAT 1239933
Score = 95.1 bits (104), Expect = 2e-14
Identities = 161/231 (70%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCT-CTTTAGAGATATTATAATC 192365
||||||||||| | | | || || || | ||| | | |||| || || ||||| ||
Sbjct 1239932 ATACCACCTCTTAATCTCAGGACCAAGTGAAGAGTGGATTCCTTTTGA-ATGTTATAGTC 1239990
Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425
||| | |||| | || |||||||| ||||| ||||||||||| | || ||||||||
Sbjct 1239991 AGAAAGAGTTCTGCCGTCTTCCAATTGCTTACCTGCAAAGATTAAACGTTGCTGATCAGG 1240050
Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485
|| || ||||| || || || || ||| || || || || | ||||| || ||
Sbjct 1240051 AGGAATACCTTCCTTGTCCTGAATCTTAGACTTGACGTTGTCAATGGTGTCTGATGACTC 1240110
Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| || || ||||| || || || ||||| || || | || || |||||
Sbjct 1240111 CACCTCGAGGGTAATAGTCTTGCCGGTTAAGGTCTTGACGAAGATTTGCAT 1240161
Score = 95.1 bits (104), Expect = 2e-14
Identities = 161/231 (70%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCT-CTTTAGAGATATTATAATC 192365
||||||||||| | | | || || || | ||| | | |||| || || ||||| ||
Sbjct 1240160 ATACCACCTCTTAATCTCAGGACCAAGTGAAGAGTGGATTCCTTTTGA-ATGTTATAGTC 1240218
Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425
||| | |||| | || |||||||| ||||| ||||||||||| | || ||||||||
Sbjct 1240219 AGAAAGAGTTCTGCCGTCTTCCAATTGCTTACCTGCAAAGATTAAACGTTGCTGATCAGG 1240278
Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485
|| || ||||| || || || || ||| || || || || | ||||| || ||
Sbjct 1240279 AGGAATACCTTCCTTGTCCTGAATCTTAGACTTGACGTTGTCAATGGTGTCTGATGACTC 1240338
Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| || || ||||| || || || ||||| || || | || || |||||
Sbjct 1240339 CACCTCGAGGGTAATAGTCTTGCCGGTTAAGGTCTTGACGAAGATTTGCAT 1240389
>seq2
Length=2687137
Score = 113 bits (124), Expect = 9e-20
Identities = 167/237 (70%), Gaps = 0/237 (0%)
Strand=Plus/Plus
Query 192303 AATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATA 192362
||| ||||||||||| | | | || | || ||||||| ||| || ||| || ||
Sbjct 1169887 AATGATACCACCTCTCAATCTCAGAACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTA 1169946
Query 192363 ATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATC 192422
|| || | |||| | || |||||||| ||||||||||| || || | ||||| ||
Sbjct 1169947 GTCGGACAGAGTTCTACCGTCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGTTGGTC 1170006
Query 192423 AGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGA 192482
||| || |||||||| || ||||| || || || || || || | || || ||
Sbjct 1170007 AGGAGGAATTCCTTCCTTGTCTTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAGGA 1170066
Query 192483 TTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
|| ||||| | |||||||| ||||| ||||| || || | || |||||||||||
Sbjct 1170067 CTCGACTTCCAAGGTAATGGTCTTACCGGTTAAGGTCTTGACGAAAATCTGCATTTT 1170123
>seq3
Length=1828518
Score = 93.3 bits (102), Expect = 8e-14
Identities = 159/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368
||||||||| | | | || || || || |||| ||| || ||| || || |||||
Sbjct 868963 ACCACCTCTCAATCTAAGGACCAAGTGCAAGGTAGACTCCTTTTGGATGTTGTAGTCAGA 868904
Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428
|| |||| |||| |||||||| |||||||||||||| | | |||||| ||||| ||
Sbjct 868903 CAAAGTTCTACCATCCTCCAATTGCTTACCAGCAAAGATCAGACGCTGTTGGTCAGGAGG 868844
Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488
||||| || || || || || || || || || |||| || || || || ||
Sbjct 868843 AATTCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTGTCGGAAGACTCCAC 868784
Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
|| | || || || ||||| || | || || | || || ||||||||
Sbjct 868783 CTCCAAGGTGATAGTCTTACCGGTAAGGGTCTTTACGAAAATTTGCATTTT 868733
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984479861249850
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |