Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F001708105.1_202016-08-12]
11 sequences; 9,597,535 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq1 206 8e-48
seq2 111 5e-19
seq4 100 8e-16
>seq1
Length=3325186
Score = 206 bits (228), Expect = 8e-48
Identities = 623/947 (66%), Gaps = 25/947 (3%)
Strand=Plus/Minus
Query 155582 AAGACCAATAGACGCCAGATTACATACCGCAGTCTCCT-TGTCGTCGCTGTATTCTACAA 155640
|||| ||||||| |||| ||||| || ||||| || | || | | || || ||||
Sbjct 2236192 AAGAGCAATAGAAGCCAAGTTACAGACAGCAGTTTCTTCTGGGGAAGAA-TACTCAACAA 2236134
Query 155641 TCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGT 155700
||||||| || |||||||| || ||| || || ||||||||||| | ||| |||
Sbjct 2236133 TCTCACAACAAAGGTTAGAGGATTTAATGACACCCAAGTTCTTCTGGTTGGTTTTCTTGT 2236074
Query 155701 TACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCT 155760
||||||||||||| || | ||| |||| || || || || ||||||| || || ||
Sbjct 2236073 TACAAGCATCCTTATACAACATGAATGGAGTACCGGTTTCTGTCTGTGCCTCGAGGATGG 2236014
Query 155761 TTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTG-CCTTCCGACTCATATTTC 155819
||| || | |||| || || | |||| | | |||||| || ||| |
Sbjct 2236013 CGTACCAAAGCTTTTGGGCTTTGATG-GTTTGTCTTCCACGACCTTCCTTTTCGTATCTT 2235955
Query 155820 ATATACAGCGTTCGGTAA--TCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGG 155877
||||| ||| || || || ||||| || || ||||| || | |
Sbjct 2235954 TCGTACAG--TTCTTCAAATTCATCGCCGTAGACGTCGGCAAGGCCAGGAGCCTCACTTG 2235897
Query 155878 GGCAAAACAGCGACCAA-----ATTTTATTACCGATTACACGCTCCATAAATACATCACT 155932
| | ||||| | ||| ||| | || ||| | | | ||| || | ||||
Sbjct 2235896 GAGAGAACAGGGTCCATTCGCCATTCTGTT--CGA---CCCTTTTCATGAACAGATCAGG 2235842
Query 155933 CGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACT-CCTCATCGCCGTGATTCTTCC 155991
||| | ||| ||| || || || || | ||| | |||| | || || ||||| |
Sbjct 2235841 GATCCATAGAGCCGGGAATAGATCTCTGGC-TCTGATTTCCTCTTTTCCATGGTTCTTAC 2235783
Query 155992 GTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTAC 156051
| | || | || | || || | ||| ||| |||| |||| |||||| ||
Sbjct 2235782 GAATGTCAATAAAGGCGAAGATGTCCGCATGCCATGGTTCCAAGTACAAAGCAAATGCAC 2235723
Query 156052 CATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCA 156108
|| | |||| ||||| ||||| ||||| ||||| || || ||||| || | | ||
Sbjct 2235722 CAGGGCGCTTGTTACCACCTTGATCAACATAACGAGCGGTGTTGTTGAAAACTCTCACCA 2235663
Query 156109 TAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAA 156168
| ||||||||||| || ||||| || || || || ||| | || || | | ||||
Sbjct 2235662 TTGGAATAATACCGTTCGAAGTACCGTTAGTACCAGCAATGTAGGATCCTGTGGCACGAA 2235603
Query 156169 CATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTA 156228
||||||||| || | ||||| ||||| | ||| |||||| ||| |||||||| |
Sbjct 2235602 TATTATGAATGTGCAAACCAATTCCACCAGCAGTTTTGGAAATTAAAGCACATTCCTTCA 2235543
Query 156229 CAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTA 156288
||||| ||||||||||||| || ||||| ||| | | || | || || |
Sbjct 2235542 AAGTATCATAAATACCTTCAATCGAGTCATCCCGCATGGCAACTAAGAAACATGACGACA 2235483
Query 156289 ATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTAT 156348
||| || | || || |||||||| || || ||||| | || ||| | |||||||| |
Sbjct 2235482 TTTGTGGGTGAGGGGTACCAGCGTTAAACAGAGTAGGAGAGGCGTGAGTGAAATACTTCT 2235423
Query 156349 TAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAG 156408
| |||| | | ||| || || ||| | | ||| | | || ||||||| |||||
Sbjct 2235422 GACTCATAAAGTTGTAGGTTTCAATAACCCTTGCAATGTCATCACCATGAATACCGATAG 2235363
Query 156409 AGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACT-CCATCAATTCGCAGAAGG 156467
||| | ||| | || |||||||| ||| ||| || | |||| ||||| |||||||
Sbjct 2235362 CGACACGCATAATTAAGTGTTGAGGACGTTCTGCAA-CATTGCCATTAATTCTCAGAAGG 2235304
Query 156468 TATGCGCGTTCCAGAGTTTTAAACCCGAAATAATCAAACAGAAAATC 156514
|| | | ||||| || || || || || |||| | || |||||||
Sbjct 2235303 TAAGATCTTTCCAAGGTCTTGAATCCAAAGTAATTATACTGAAAATC 2235257
Score = 86.0 bits (94), Expect = 2e-11
Identities = 197/291 (68%), Gaps = 8/291 (3%)
Strand=Plus/Minus
Query 302590 AAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACA 302649
|||||||||||||||||||| ||| | ||||| || || || ||||| | ||| ||
Sbjct 1102881 AAACGACGCTGAATATAACCTGTTTCCGCAGTTTTCACGGCAGTGTCAATCAAACCCTCA 1102822
Query 302650 CGACCACCCATAGCATGGAAGAATAGCTCTTCCG--GTCGTAGCCCCCCAATAAAGGAGC 302707
|||||| |||| || ||||| || | ||||| | ||| | || | ||| |||||
Sbjct 1102821 CGACCAGCCATGGCGTGGAAAAAAAACTCTTGTGGAGTC-AATCCTCTCAA-GTAGGAGT 1102764
Query 302708 TCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCC 302767
| || || ||||| | || ||||| ||| ||| ||||| || |||| | |
Sbjct 1102763 TTTCCACAAAACCCTTAGATTCTGGCGAGAAGTCATCCTTAGTAAAATGCGGCAACGAAC 1102704
Query 302768 TGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAA 302827
| || | ||| | | |||||||| || || || ||||||| || | || | |
Sbjct 1102703 GATCAGCAAAACCGAAAGCAATACGCTTACCTTCCACCATCTGCTGACCAACACATGCAG 1102644
Query 302828 TCATCTGCGAAATATTTAAATCACTG--CCCTTGGAGCCAGCATTTACCAT 302876
|||||| | |||||| ||| | | |||||||| || ||| |||||
Sbjct 1102643 ACATCTGAGCAATATT--AATGAAGGATCCCTTGGAACCTGCAGACACCAT 1102595
>seq2
Length=2687137
Score = 111 bits (122), Expect = 5e-19
Identities = 308/465 (66%), Gaps = 22/465 (5%)
Strand=Plus/Minus
Query 133203 ATGAAAAACATTTTATTTCTATGATTTTAGCGTTTTTTGCTGCGAGTGATGGTATTGTTC 133262
|||| || ||||||| |||| || | || ||||||||||| ||||||||||||
Sbjct 443463 ATGAGAAGTATTTTATCTCTAGAGTTCTTGCCTTTTTTGCTGCCTCTGATGGTATTGTCA 443404
Query 133263 TTGAAAATTT--AGGAACACGGTTTATGGGAGAAGTTCAACTGGCCGAAGCCCGTGCCTT 133320
||||||||| |||| || || | | || |||||||| ||||||| ||
Sbjct 443403 ATGAAAATTTGGTGGAAAAC--TTCAGCGCTGAGGTTCAACTTCCCGAAGCAAAATGTTT 443346
Query 133321 TTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATATTCTACTCTAATTGA 133380
||| || | || || |||||| || ||||| || || || || | |||||
Sbjct 443345 TTACGGTTTTCAAATCATGATGGAGAACATCCACTCCGAAACTTACTCATTGTTGATTGA 443286
Query 133381 TACTTACATCAAAGATACCGTCCAGAAGCA--CAAA---CTATTCAACGCCATTAGCGA- 133434
||||||||||||||| |||| ||| | | || | ||||| |||| | | ||
Sbjct 443285 TACTTACATCAAAGA-----TCCAAAAGAATCCGAATTCTTGTTCAATGCCA-TCGAGAC 443232
Query 133435 ATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGAT---CCAGGACAAGCG 133491
|||| ||||| ||| | || |||||||||| || | |||||| | | ||| |
Sbjct 443231 CATTCCATGTATCAAAGAAAAGGCTGACTGGGCCATGAGATGGATTGCCGATGACGA--- 443175
Query 133492 TGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGG 133551
||| || ||| ||| | ||||| || |||| || || || || || || ||
Sbjct 443174 TGCTTTGTTCGCTGAACGTTTGGTTGCCTTCGCTGCTGTTGAAGGTATCTTCTTTTCGGG 443115
Query 133552 TGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTC 133611
| ||| ||||| || ||| | |||||| | ||| || | || || || || ||
Sbjct 443114 CTCTTTCGCTTCTATCTTCTGGTTGAAAAAGAGAGGTCTTATGCCAGGTTTGACCTTCTC 443055
Query 133612 TAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGC 133656
|| || ||||||| || || || | | | |||||||| |||||
Sbjct 443054 CAATGAGCTTATTTGCAGAGATGAAGGATTACACACCGACTTTGC 443010
>seq4
Length=1577441
Score = 100 bits (110), Expect = 8e-16
Identities = 212/313 (68%), Gaps = 10/313 (3%)
Strand=Plus/Minus
Query 289036 GCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC--AAATA 289093
||||||||||| |||| ||| || | | | || | | | ||| || |||| |||||
Sbjct 1398815 GCATCAATTTCATCAACGAATATGATAGATGGCGCCATCTTTCTAGC--TTGCTGAAATA 1398758
Query 289094 ATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATA 289153
| || | || || ||||| |||| ||| ||| ||||||| |||||||||||| | || |
Sbjct 1398757 AATCACGAACTCGAGATGCACCAACACCTACAAACATTTCCACAAATTCAGAACCCGAAA 1398698
Query 289154 CTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTG 289213
| | |||| || |||||||| || ||| |||| || | ||||||||| |
Sbjct 1398697 CAGACAAAAATGGAACTCCAGCTTCGCCAGCAGTCGCCTTCGCTAGCAATGTCTTACCAG 1398638
Query 289214 TTCCAGGTGGTCCCTCTAATAGAA---CTCCCTTTGGTACTTTTGCCCCAGCAGACTTAT 289270
| || || || ||| | |||| | || |||| | |||||| || || ||
Sbjct 1398637 TACCCGGAGGACCC---GAAAGAATTGCACCTCTTGGAATTTTTGCTCCTAGTTTCTCAT 1398581
Query 289271 ATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCAC 289330
|||||| ||| |||| | || | ||| | |||| || ||| | ||| || ||||| |
Sbjct 1398580 ATTTCTTAGGATTCTTCAGGAACTGTACGAATTCCATAATTTCTTCTTTAGCTTCATCGC 1398521
Query 289331 ATCCTGCTACATC 289343
| || || || ||
Sbjct 1398520 AACCAGCCACGTC 1398508
Score = 91.5 bits (100), Expect = 4e-13
Identities = 106/142 (75%), Gaps = 2/142 (1%)
Strand=Plus/Plus
Query 251416 CACTTATT--ACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGG 251473
||| |||| ||||||||| || | | | ||||||||||| || || | ||||
Sbjct 251097 CACATATTCCACACACATGTACTCGGAAGGCATCAGATGCTTCCATTAATCTCTCCTTTA 251156
Query 251474 TGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGAC 251533
||| | || |||||||| | ||||||||| || | ||||| || |||||||||||||
Sbjct 251157 AGAAACCAGCGGCACCGTGAGCAATCATACAGTCTCTTTCCATCTCTCCGAAACGAAGAC 251216
Query 251534 CACCATCGCGAGCCCTACCCTC 251555
|||| || |||| |||||| ||
Sbjct 251217 CACCGTCACGAGACCTACCTTC 251238
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471817392565707
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |