Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F001708105.1_202016-08-12] 11 sequences; 9,597,535 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1 206 8e-48 seq2 111 5e-19 seq4 100 8e-16 >seq1 Length=3325186 Score = 206 bits (228), Expect = 8e-48 Identities = 623/947 (66%), Gaps = 25/947 (3%) Strand=Plus/Minus Query 155582 AAGACCAATAGACGCCAGATTACATACCGCAGTCTCCT-TGTCGTCGCTGTATTCTACAA 155640 |||| ||||||| |||| ||||| || ||||| || | || | | || || |||| Sbjct 2236192 AAGAGCAATAGAAGCCAAGTTACAGACAGCAGTTTCTTCTGGGGAAGAA-TACTCAACAA 2236134 Query 155641 TCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGT 155700 ||||||| || |||||||| || ||| || || ||||||||||| | ||| ||| Sbjct 2236133 TCTCACAACAAAGGTTAGAGGATTTAATGACACCCAAGTTCTTCTGGTTGGTTTTCTTGT 2236074 Query 155701 TACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCT 155760 ||||||||||||| || | ||| |||| || || || || ||||||| || || || Sbjct 2236073 TACAAGCATCCTTATACAACATGAATGGAGTACCGGTTTCTGTCTGTGCCTCGAGGATGG 2236014 Query 155761 TTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTG-CCTTCCGACTCATATTTC 155819 ||| || | |||| || || | |||| | | |||||| || ||| | Sbjct 2236013 CGTACCAAAGCTTTTGGGCTTTGATG-GTTTGTCTTCCACGACCTTCCTTTTCGTATCTT 2235955 Query 155820 ATATACAGCGTTCGGTAA--TCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGG 155877 ||||| ||| || || || ||||| || || ||||| || | | Sbjct 2235954 TCGTACAG--TTCTTCAAATTCATCGCCGTAGACGTCGGCAAGGCCAGGAGCCTCACTTG 2235897 Query 155878 GGCAAAACAGCGACCAA-----ATTTTATTACCGATTACACGCTCCATAAATACATCACT 155932 | | ||||| | ||| ||| | || ||| | | | ||| || | |||| Sbjct 2235896 GAGAGAACAGGGTCCATTCGCCATTCTGTT--CGA---CCCTTTTCATGAACAGATCAGG 2235842 Query 155933 CGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACT-CCTCATCGCCGTGATTCTTCC 155991 ||| | ||| ||| || || || || | ||| | |||| | || || ||||| | Sbjct 2235841 GATCCATAGAGCCGGGAATAGATCTCTGGC-TCTGATTTCCTCTTTTCCATGGTTCTTAC 2235783 Query 155992 GTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTAC 156051 | | || | || | || || | ||| ||| |||| |||| |||||| || Sbjct 2235782 GAATGTCAATAAAGGCGAAGATGTCCGCATGCCATGGTTCCAAGTACAAAGCAAATGCAC 2235723 Query 156052 CATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCA 156108 || | |||| ||||| ||||| ||||| ||||| || || ||||| || | | || Sbjct 2235722 CAGGGCGCTTGTTACCACCTTGATCAACATAACGAGCGGTGTTGTTGAAAACTCTCACCA 2235663 Query 156109 TAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAA 156168 | ||||||||||| || ||||| || || || || ||| | || || | | |||| Sbjct 2235662 TTGGAATAATACCGTTCGAAGTACCGTTAGTACCAGCAATGTAGGATCCTGTGGCACGAA 2235603 Query 156169 CATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTA 156228 ||||||||| || | ||||| ||||| | ||| |||||| ||| |||||||| | Sbjct 2235602 TATTATGAATGTGCAAACCAATTCCACCAGCAGTTTTGGAAATTAAAGCACATTCCTTCA 2235543 Query 156229 CAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTA 156288 ||||| ||||||||||||| || ||||| ||| | | || | || || | Sbjct 2235542 AAGTATCATAAATACCTTCAATCGAGTCATCCCGCATGGCAACTAAGAAACATGACGACA 2235483 Query 156289 ATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTAT 156348 ||| || | || || |||||||| || || ||||| | || ||| | |||||||| | Sbjct 2235482 TTTGTGGGTGAGGGGTACCAGCGTTAAACAGAGTAGGAGAGGCGTGAGTGAAATACTTCT 2235423 Query 156349 TAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAG 156408 | |||| | | ||| || || ||| | | ||| | | || ||||||| ||||| Sbjct 2235422 GACTCATAAAGTTGTAGGTTTCAATAACCCTTGCAATGTCATCACCATGAATACCGATAG 2235363 Query 156409 AGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACT-CCATCAATTCGCAGAAGG 156467 ||| | ||| | || |||||||| ||| ||| || | |||| ||||| ||||||| Sbjct 2235362 CGACACGCATAATTAAGTGTTGAGGACGTTCTGCAA-CATTGCCATTAATTCTCAGAAGG 2235304 Query 156468 TATGCGCGTTCCAGAGTTTTAAACCCGAAATAATCAAACAGAAAATC 156514 || | | ||||| || || || || || |||| | || ||||||| Sbjct 2235303 TAAGATCTTTCCAAGGTCTTGAATCCAAAGTAATTATACTGAAAATC 2235257 Score = 86.0 bits (94), Expect = 2e-11 Identities = 197/291 (68%), Gaps = 8/291 (3%) Strand=Plus/Minus Query 302590 AAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACA 302649 |||||||||||||||||||| ||| | ||||| || || || ||||| | ||| || Sbjct 1102881 AAACGACGCTGAATATAACCTGTTTCCGCAGTTTTCACGGCAGTGTCAATCAAACCCTCA 1102822 Query 302650 CGACCACCCATAGCATGGAAGAATAGCTCTTCCG--GTCGTAGCCCCCCAATAAAGGAGC 302707 |||||| |||| || ||||| || | ||||| | ||| | || | ||| ||||| Sbjct 1102821 CGACCAGCCATGGCGTGGAAAAAAAACTCTTGTGGAGTC-AATCCTCTCAA-GTAGGAGT 1102764 Query 302708 TCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCC 302767 | || || ||||| | || ||||| ||| ||| ||||| || |||| | | Sbjct 1102763 TTTCCACAAAACCCTTAGATTCTGGCGAGAAGTCATCCTTAGTAAAATGCGGCAACGAAC 1102704 Query 302768 TGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAA 302827 | || | ||| | | |||||||| || || || ||||||| || | || | | Sbjct 1102703 GATCAGCAAAACCGAAAGCAATACGCTTACCTTCCACCATCTGCTGACCAACACATGCAG 1102644 Query 302828 TCATCTGCGAAATATTTAAATCACTG--CCCTTGGAGCCAGCATTTACCAT 302876 |||||| | |||||| ||| | | |||||||| || ||| ||||| Sbjct 1102643 ACATCTGAGCAATATT--AATGAAGGATCCCTTGGAACCTGCAGACACCAT 1102595 >seq2 Length=2687137 Score = 111 bits (122), Expect = 5e-19 Identities = 308/465 (66%), Gaps = 22/465 (5%) Strand=Plus/Minus Query 133203 ATGAAAAACATTTTATTTCTATGATTTTAGCGTTTTTTGCTGCGAGTGATGGTATTGTTC 133262 |||| || ||||||| |||| || | || ||||||||||| |||||||||||| Sbjct 443463 ATGAGAAGTATTTTATCTCTAGAGTTCTTGCCTTTTTTGCTGCCTCTGATGGTATTGTCA 443404 Query 133263 TTGAAAATTT--AGGAACACGGTTTATGGGAGAAGTTCAACTGGCCGAAGCCCGTGCCTT 133320 ||||||||| |||| || || | | || |||||||| ||||||| || Sbjct 443403 ATGAAAATTTGGTGGAAAAC--TTCAGCGCTGAGGTTCAACTTCCCGAAGCAAAATGTTT 443346 Query 133321 TTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATATTCTACTCTAATTGA 133380 ||| || | || || |||||| || ||||| || || || || | ||||| Sbjct 443345 TTACGGTTTTCAAATCATGATGGAGAACATCCACTCCGAAACTTACTCATTGTTGATTGA 443286 Query 133381 TACTTACATCAAAGATACCGTCCAGAAGCA--CAAA---CTATTCAACGCCATTAGCGA- 133434 ||||||||||||||| |||| ||| | | || | ||||| |||| | | || Sbjct 443285 TACTTACATCAAAGA-----TCCAAAAGAATCCGAATTCTTGTTCAATGCCA-TCGAGAC 443232 Query 133435 ATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGAT---CCAGGACAAGCG 133491 |||| ||||| ||| | || |||||||||| || | |||||| | | ||| | Sbjct 443231 CATTCCATGTATCAAAGAAAAGGCTGACTGGGCCATGAGATGGATTGCCGATGACGA--- 443175 Query 133492 TGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGG 133551 ||| || ||| ||| | ||||| || |||| || || || || || || || Sbjct 443174 TGCTTTGTTCGCTGAACGTTTGGTTGCCTTCGCTGCTGTTGAAGGTATCTTCTTTTCGGG 443115 Query 133552 TGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTC 133611 | ||| ||||| || ||| | |||||| | ||| || | || || || || || Sbjct 443114 CTCTTTCGCTTCTATCTTCTGGTTGAAAAAGAGAGGTCTTATGCCAGGTTTGACCTTCTC 443055 Query 133612 TAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGC 133656 || || ||||||| || || || | | | |||||||| ||||| Sbjct 443054 CAATGAGCTTATTTGCAGAGATGAAGGATTACACACCGACTTTGC 443010 >seq4 Length=1577441 Score = 100 bits (110), Expect = 8e-16 Identities = 212/313 (68%), Gaps = 10/313 (3%) Strand=Plus/Minus Query 289036 GCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC--AAATA 289093 ||||||||||| |||| ||| || | | | || | | | ||| || |||| ||||| Sbjct 1398815 GCATCAATTTCATCAACGAATATGATAGATGGCGCCATCTTTCTAGC--TTGCTGAAATA 1398758 Query 289094 ATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATA 289153 | || | || || ||||| |||| ||| ||| ||||||| |||||||||||| | || | Sbjct 1398757 AATCACGAACTCGAGATGCACCAACACCTACAAACATTTCCACAAATTCAGAACCCGAAA 1398698 Query 289154 CTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTG 289213 | | |||| || |||||||| || ||| |||| || | ||||||||| | Sbjct 1398697 CAGACAAAAATGGAACTCCAGCTTCGCCAGCAGTCGCCTTCGCTAGCAATGTCTTACCAG 1398638 Query 289214 TTCCAGGTGGTCCCTCTAATAGAA---CTCCCTTTGGTACTTTTGCCCCAGCAGACTTAT 289270 | || || || ||| | |||| | || |||| | |||||| || || || Sbjct 1398637 TACCCGGAGGACCC---GAAAGAATTGCACCTCTTGGAATTTTTGCTCCTAGTTTCTCAT 1398581 Query 289271 ATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCAC 289330 |||||| ||| |||| | || | ||| | |||| || ||| | ||| || ||||| | Sbjct 1398580 ATTTCTTAGGATTCTTCAGGAACTGTACGAATTCCATAATTTCTTCTTTAGCTTCATCGC 1398521 Query 289331 ATCCTGCTACATC 289343 | || || || || Sbjct 1398520 AACCAGCCACGTC 1398508 Score = 91.5 bits (100), Expect = 4e-13 Identities = 106/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 251416 CACTTATT--ACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGG 251473 ||| |||| ||||||||| || | | | ||||||||||| || || | |||| Sbjct 251097 CACATATTCCACACACATGTACTCGGAAGGCATCAGATGCTTCCATTAATCTCTCCTTTA 251156 Query 251474 TGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGAC 251533 ||| | || |||||||| | ||||||||| || | ||||| || ||||||||||||| Sbjct 251157 AGAAACCAGCGGCACCGTGAGCAATCATACAGTCTCTTTCCATCTCTCCGAAACGAAGAC 251216 Query 251534 CACCATCGCGAGCCCTACCCTC 251555 |||| || |||| |||||| || Sbjct 251217 CACCGTCACGAGACCTACCTTC 251238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471817392565707