Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F001708105.1_202016-08-12]
11 sequences; 9,597,535 total letters
Query= NC_023177.1
Length=124688
Score E
Sequences producing significant alignments: (Bits) Value
seq2 113 4e-20
seq3 100 2e-16
seq4 89.7 4e-13
>seq2
Length=2687137
Score = 113 bits (124), Expect = 4e-20
Identities = 163/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612
|||||||| ||||| ||||| || ||||| || || ||||||||| | ||| ||| |
Sbjct 1170123 AAAATGCAGATTTTCGTCAAGACCTTAACCGGTAAGACCATTACCTTGGAAGTCGAGTCC 1170064
Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672
||| || ||| | | || || |||||| || || ||||| | || ||
Sbjct 1170063 TCCGACACCATCGACAACGTCAAGTCCAAGATTCAAGACAAGGAAGGAATTCCTCCTGAC 1170004
Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732
|| || | | |||| ||| ||||| || |||| |||| | ||| || | ||||||
Sbjct 1170003 CAACAACGTTTGATTTTTGCTGGTAAGCAATTGGAAGACGGTAGAACTCTGTCCGACTAC 1169944
Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782
||||| || ||||||||||| |||||| |||| |||||||| |||| ||
Sbjct 1169943 AACATCCAGAAGGAGTCTACTTTGCACCTGGTTCTGAGATTGAGAGGTGG 1169894
>seq3
Length=1828518
Score = 100 bits (110), Expect = 2e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612
|||||||||||||| || || || | || || || || || ||| | || |||| ||
Sbjct 868733 AAAATGCAAATTTTCGTAAAGACCCTTACCGGTAAGACTATCACCTTGGAGGTGGAGTCT 868792
Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672
||| ||| | | | | || || |||||| || || || || | || ||
Sbjct 868793 TCCGACACTATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCTCCTGAC 868852
Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732
|| ||| | || || | ||| ||||| || ||||||| | | ||| || | ||||||
Sbjct 868853 CAACAGCGTCTGATCTTTGCTGGTAAGCAATTGGAGGATGGTAGAACTTTGTCTGACTAC 868912
Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782
||||| |||||||||||||| |||||| |||| | |||||| |||| ||
Sbjct 868913 AACATCCAAAAGGAGTCTACCTTGCACTTGGTCCTTAGATTGAGAGGTGG 868962
>seq4
Length=1577441
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
|||||||| || ||||| || ||||| ||||| || |||||| |||| |||| |
Sbjct 1240161 ATGCAAATCTTCGTCAAGACCTTAACCGGCAAGACTATTACCCTCGAGGTGGAGTCATCA 1240102
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
|| || | | | | || || |||||| || || ||||| | || ||||||
Sbjct 1240101 GACACCATTGACAACGTCAAGTCTAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCAG 1240042
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
|| | | || | ||| ||||| || |||| |||| || ||| | | ||||| |||
Sbjct 1240041 CAACGTTTAATCTTTGCAGGTAAGCAATTGGAAGACGGCAGAACTCTTTCTGACTATAAC 1239982
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782
||||||||||| || || | ||| |||| ||||||| |||| ||
Sbjct 1239981 ATTCAAAAGGAATCCACTCTTCACTTGGTCCTGAGATTAAGAGGTGG 1239935
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
|||||||| || ||||| || ||||| ||||| || |||||| |||| |||| |
Sbjct 1240389 ATGCAAATCTTCGTCAAGACCTTAACCGGCAAGACTATTACCCTCGAGGTGGAGTCATCA 1240330
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
|| || | | | | || || |||||| || || ||||| | || ||||||
Sbjct 1240329 GACACCATTGACAACGTCAAGTCTAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCAG 1240270
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
|| | | || | ||| ||||| || |||| |||| || ||| | | ||||| |||
Sbjct 1240269 CAACGTTTAATCTTTGCAGGTAAGCAATTGGAAGACGGCAGAACTCTTTCTGACTATAAC 1240210
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782
||||||||||| || || | ||| |||| ||||||| |||| ||
Sbjct 1240209 ATTCAAAAGGAATCCACTCTTCACTTGGTCCTGAGATTAAGAGGTGG 1240163
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/226 (69%), Gaps = 2/226 (1%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
|||||||| || ||||| || ||||| ||||| || |||||| |||| |||| |
Sbjct 1239933 ATGCAAATCTTCGTCAAGACCTTAACCGGCAAGACTATTACCCTCGAGGTGGAGTCATCA 1239874
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
|| || | | | | || || |||||| || || ||||| | || ||||||
Sbjct 1239873 GACACCATTGACAACGTCAAGTCTAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCAG 1239814
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
|| | | || | ||| ||||| || |||| |||| || ||| | | ||||| |||
Sbjct 1239813 CAACGTTTAATCTTTGCAGGTAAGCAATTGGAAGACGGCAGAACTCTTTCTGACTATAAC 1239754
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGG 107781
||||||||||| || || | ||| | || || ||||| ||||||
Sbjct 1239753 ATTCAAAAGGAATCCACTCTTCACTTAGTTTTAAGATT--GAGGGG 1239710
Score = 82.4 bits (90), Expect = 6e-11
Identities = 156/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612
|||||||| |||||||| ||||| ||||||| || || || || | || |||| |
Sbjct 1240620 AAAATGCAGATTTTTGTGAAAACCCTAACAGGTAAGACTATCACTCTTGAGGTGGAGTCA 1240561
Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672
|| || | | | | || || |||||| || || ||||| | || |||
Sbjct 1240560 TCAGACACCATTGACAACGTCAAGTCTAAGATTCAGGACAAGGAAGGTATTCCTCCTGAT 1240501
Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732
||||| | | || | ||| ||||| || |||| |||| || ||| | | |||||
Sbjct 1240500 CAGCAACGTTTAATCTTTGCAGGTAAGCAATTGGAAGACGGCAGAACTCTTTCTGACTAT 1240441
Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782
|||||||||||||| || || | ||| |||| ||||||| |||| ||
Sbjct 1240440 AACATTCAAAAGGAATCCACTCTTCACTTGGTCCTGAGATTAAGAGGTGG 1240391
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 398876746525579
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |