Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F001708105.1_202016-08-12] 11 sequences; 9,597,535 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq2 113 4e-20 seq3 100 2e-16 seq4 89.7 4e-13 >seq2 Length=2687137 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 |||||||| ||||| ||||| || ||||| || || ||||||||| | ||| ||| | Sbjct 1170123 AAAATGCAGATTTTCGTCAAGACCTTAACCGGTAAGACCATTACCTTGGAAGTCGAGTCC 1170064 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 ||| || ||| | | || || |||||| || || ||||| | || || Sbjct 1170063 TCCGACACCATCGACAACGTCAAGTCCAAGATTCAAGACAAGGAAGGAATTCCTCCTGAC 1170004 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 || || | | |||| ||| ||||| || |||| |||| | ||| || | |||||| Sbjct 1170003 CAACAACGTTTGATTTTTGCTGGTAAGCAATTGGAAGACGGTAGAACTCTGTCCGACTAC 1169944 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||| || ||||||||||| |||||| |||| |||||||| |||| || Sbjct 1169943 AACATCCAGAAGGAGTCTACTTTGCACCTGGTTCTGAGATTGAGAGGTGG 1169894 >seq3 Length=1828518 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 |||||||||||||| || || || | || || || || || ||| | || |||| || Sbjct 868733 AAAATGCAAATTTTCGTAAAGACCCTTACCGGTAAGACTATCACCTTGGAGGTGGAGTCT 868792 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 ||| ||| | | | | || || |||||| || || || || | || || Sbjct 868793 TCCGACACTATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCTCCTGAC 868852 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 || ||| | || || | ||| ||||| || ||||||| | | ||| || | |||||| Sbjct 868853 CAACAGCGTCTGATCTTTGCTGGTAAGCAATTGGAGGATGGTAGAACTTTGTCTGACTAC 868912 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||| |||||||||||||| |||||| |||| | |||||| |||| || Sbjct 868913 AACATCCAAAAGGAGTCTACCTTGCACTTGGTCCTTAGATTGAGAGGTGG 868962 >seq4 Length=1577441 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| || ||||| || ||||| ||||| || |||||| |||| |||| | Sbjct 1240161 ATGCAAATCTTCGTCAAGACCTTAACCGGCAAGACTATTACCCTCGAGGTGGAGTCATCA 1240102 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | | || || |||||| || || ||||| | || |||||| Sbjct 1240101 GACACCATTGACAACGTCAAGTCTAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCAG 1240042 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || | | || | ||| ||||| || |||| |||| || ||| | | ||||| ||| Sbjct 1240041 CAACGTTTAATCTTTGCAGGTAAGCAATTGGAAGACGGCAGAACTCTTTCTGACTATAAC 1239982 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||||||||| || || | ||| |||| ||||||| |||| || Sbjct 1239981 ATTCAAAAGGAATCCACTCTTCACTTGGTCCTGAGATTAAGAGGTGG 1239935 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| || ||||| || ||||| ||||| || |||||| |||| |||| | Sbjct 1240389 ATGCAAATCTTCGTCAAGACCTTAACCGGCAAGACTATTACCCTCGAGGTGGAGTCATCA 1240330 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | | || || |||||| || || ||||| | || |||||| Sbjct 1240329 GACACCATTGACAACGTCAAGTCTAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCAG 1240270 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || | | || | ||| ||||| || |||| |||| || ||| | | ||||| ||| Sbjct 1240269 CAACGTTTAATCTTTGCAGGTAAGCAATTGGAAGACGGCAGAACTCTTTCTGACTATAAC 1240210 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||||||||| || || | ||| |||| ||||||| |||| || Sbjct 1240209 ATTCAAAAGGAATCCACTCTTCACTTGGTCCTGAGATTAAGAGGTGG 1240163 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| || ||||| || ||||| ||||| || |||||| |||| |||| | Sbjct 1239933 ATGCAAATCTTCGTCAAGACCTTAACCGGCAAGACTATTACCCTCGAGGTGGAGTCATCA 1239874 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | | || || |||||| || || ||||| | || |||||| Sbjct 1239873 GACACCATTGACAACGTCAAGTCTAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCAG 1239814 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || | | || | ||| ||||| || |||| |||| || ||| | | ||||| ||| Sbjct 1239813 CAACGTTTAATCTTTGCAGGTAAGCAATTGGAAGACGGCAGAACTCTTTCTGACTATAAC 1239754 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGG 107781 ||||||||||| || || | ||| | || || ||||| |||||| Sbjct 1239753 ATTCAAAAGGAATCCACTCTTCACTTAGTTTTAAGATT--GAGGGG 1239710 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 |||||||| |||||||| ||||| ||||||| || || || || | || |||| | Sbjct 1240620 AAAATGCAGATTTTTGTGAAAACCCTAACAGGTAAGACTATCACTCTTGAGGTGGAGTCA 1240561 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 || || | | | | || || |||||| || || ||||| | || ||| Sbjct 1240560 TCAGACACCATTGACAACGTCAAGTCTAAGATTCAGGACAAGGAAGGTATTCCTCCTGAT 1240501 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 ||||| | | || | ||| ||||| || |||| |||| || ||| | | ||||| Sbjct 1240500 CAGCAACGTTTAATCTTTGCAGGTAAGCAATTGGAAGACGGCAGAACTCTTTCTGACTAT 1240441 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 |||||||||||||| || || | ||| |||| ||||||| |||| || Sbjct 1240440 AACATTCAAAAGGAATCCACTCTTCACTTGGTCCTGAGATTAAGAGGTGG 1240391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398876746525579