Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F001708105.1_202016-08-12]
11 sequences; 9,597,535 total letters
Query= NC_024697.1
Length=370920
Score E
Sequences producing significant alignments: (Bits) Value
seq1 226 7e-54
seq2 84.2 5e-11
>seq1
Length=3325186
Score = 226 bits (250), Expect = 7e-54
Identities = 496/737 (67%), Gaps = 7/737 (1%)
Strand=Plus/Plus
Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423
||||||||||||||| | || | ||||| || || ||||||||||| |||| ||| |
Sbjct 2235332 GAACGTCCTCAACACTTAATTATGCGTGTCGCTATCGGTATTCATGGTGATGACATTGCA 2235391
Query 110424 GCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTACC 110483
||||||||| || | | | ||| | ||| | | ||| || |||||||
Sbjct 2235392 AGGGTTATTGAAACCTACAACTTTATGAGTCAGAAGTATTTCACTCACGCCTCTCCTACT 2235451
Query 110484 CTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTC-TAGGAATTAA 110542
|| |||||||| || || | |||| || | || || |||||| | | ||
Sbjct 2235452 CTGTTTAACGCTGGTACCCCTCACCCACAAATGTCGTCATG-TTTCTTAGTTGCCATGCG 2235510
Query 110543 CGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAA 110602
||||| || |||||||||||||||||| || | || ||| |||| | ||||| ||||
Sbjct 2235511 GGATGACTCGATTGAAGGTATTTATGATACTTTGAAGGAATGTGCTTTAATTTCCAAAAC 2235570
Query 110603 CTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAAC 110662
|||| ||||||||| | ||| ||||| ||||||| | | |||| | | || ||
Sbjct 2235571 TGCTGGTGGAATTGGTTTGCACATTCATAATATTCGTGCCACAGGATCCTACATTGCTGG 2235630
Query 110663 AGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAA 110722
| || ||| |||| | || || |||||||| | ||||| |||||| |||| ||
Sbjct 2235631 TACTAACGGTACTTCGAACGGTATTATTCCAATGGTGAGAGTTTTCAACAACACCGCTCG 2235690
Query 110723 ATATGTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTG 110779
||||| ||||||||||| ||| | ||| |||||||| | || | ||||| ||
Sbjct 2235691 TTATGTTGATCAAGGTGGTAACAAGCGCCCTGGTGCATTTGCTTTGTACTTGGAACCATG 2235750
Query 110780 GCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAG 110839
|||| | || || || | || | || ||||||| || || ||| || ||| ||
Sbjct 2235751 GCATGCGGACATCTTCGCCTTTATTGACATTCGTAAGAACCATGGAAAAGAGGAAATCAG 2235810
Query 110840 AGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGA 110899
||| | ||| |||| || | ||||| | ||| | ||||||||| | || || |
Sbjct 2235811 AGCCAGAGATCTATTCCCGGCTCTATGGATCCCTGATCTGTTCATGAAAAGGGTCGAACA 2235870
Query 110900 AAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGG 110959
|||||| ||| | || | | ||| | ||||||| || | || || || ||
Sbjct 2235871 GAATGGCGAATGGACCCTGTTCTCTCCAAGTGAGGCTCCTGGCCTTGCCGACGTCTACGG 2235930
Query 110960 AAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGG-CAAGTTTCGCAAACAAA 111018
| || |||||||| || ||||||| ||| ||||| ||||| | | ||||| |
Sbjct 2235931 CGATGAATTTGAAGAACTGTACGAAAGATACGAAAAGGAAGGTCGTGGAAGACAAAC-CA 2235989
Query 111019 TTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTT 111078
| ||| ||| | ||||||| | ||||| || |||| ||||| || ||||| |
Sbjct 2235990 TCAAAGCCCAAAAGCTTTGGTACGCCATCCTCGAGGCACAGACAGAAACCGGTACTCCAT 2236049
Query 111079 ATATTTTGTATAAAGAT 111095
|| |||||||| |||
Sbjct 2236050 TCATGTTGTATAAGGAT 2236066
Score = 95.1 bits (104), Expect = 3e-14
Identities = 172/249 (69%), Gaps = 2/249 (1%)
Strand=Plus/Minus
Query 72160 CCAGAAGTTACTTTGCCAAACACAACGTGTTTGTTATTTAAATGTGGTTGAGGTGCAAGT 72219
|||| | | ||||| |||||||| || || ||||||| | ||| || ||| ||
Sbjct 1099153 CCAGCAATAACTTTTCCAAACACTACATGCTTGTTATCCAGATGAGGAGTAGGGACAGTG 1099094
Query 72220 GTAATGAAGAATTGCGAGTTATTTGAATCAGGACCCGAGTTAGCCATAGAAACCA-AACC 72278
||||| |||||||| || ||| | | || || | ||| ||||| || | | || |
Sbjct 1099093 GTAATAAAGAATTGAGATCCATTAGTTCCTGGTCCAGCGTTTGCCATGGAGAGAAGAAAC 1099034
Query 72279 TGCTTCTGAATGCTTTAATAAGAAATTCTCATCTTCAAAAGTTTCTCCATATATACTTTG 72338
|||| | | || | ||| |||||| ||||||||||| ||||||||||||| |
Sbjct 1099033 GGCTTGTCA-TGAGTCAATTGGAAATTTTCATCTTCAAATTTTTCTCCATATATGGACTC 1098975
Query 72339 ACCTGAGCTTCCATCAAAGTTCACAATATCACCTCCTTGAACCATAAAATTATTAATTAC 72398
|||| | || | | || || ||||| ||||||||||| |||| ||||| |
Sbjct 1098974 ACCTCCAGTACCGTTACCATTGGTAAAGTCACCACCTTGAACCATGAAATCTTTAATGAT 1098915
Query 72399 TCTATGGAA 72407
|||||||||
Sbjct 1098914 TCTATGGAA 1098906
Score = 89.7 bits (98), Expect = 1e-12
Identities = 129/182 (71%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365
||||| ||| || ||||| || || || || | ||||| ||| | |||||||||
Sbjct 1101659 AGACACCTGATGGATGATGATCCTGTCCTATTTAACCGTCAACCTTCATTACATAAAATG 1101718
Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGT 305425
|| |||||||| |||| |||||||||| | | | || ||| || ||||| || |
Sbjct 1101719 TCCATGATGGCACATAGAGTCAAAGTAATGCCCTACTCTACTTTTAGACTAAATTTATCT 1101778
Query 305426 GCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485
| | || |||||||| ||||| || || ||||||||||| | ||||| || |||
Sbjct 1101779 GTCACATCACCCTATAATGCTGATTTCGACGGTGATGAAATGAACTTACATGTTCCACAA 1101838
Query 305486 TC 305487
||
Sbjct 1101839 TC 1101840
>seq2
Length=2687137
Score = 84.2 bits (92), Expect = 5e-11
Identities = 145/210 (69%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 131800 AAAGAAA--GCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAATTTTTCTACA 131857
||||||| || || ||||| || | ||||||| ||||| ||| || || |
Sbjct 443218 AAAGAAAAGGCTGACTGGGCCATGAGATGGATTGCCGATGACGATGCTTTGTTCGCTGAA 443159
Query 131858 AGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATC 131917
| | || || || ||| |||||||||||| |||||||| || ||||| | |||||
Sbjct 443158 CGTTTGGTTGCCTTCGCTGCTGTTGAAGGTATCTTCTTTTCGGGCTCTTTCGCTTCTATC 443099
Query 131918 TTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCG 131977
|| ||| | || ||| | || | ||||| || | | || |||||| | | || |
Sbjct 443098 TTCTGGTTGAAAAAGAGAGGTCTTATGCCAGGTTTGACCTTCTCCAATGAGCTTATTTGC 443039
Query 131978 AGAGATGAAGCATTGCATACTGAATTTGCT 132007
|||||||||| ||| || || || ||||||
Sbjct 443038 AGAGATGAAGGATTACACACCGACTTTGCT 443009
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1186812632733571
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |