Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F001708105.1_202016-08-12] 11 sequences; 9,597,535 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq2 208 6e-49 >seq2 Length=2687137 Score = 208 bits (230), Expect = 6e-49 Identities = 567/851 (67%), Gaps = 29/851 (3%) Strand=Plus/Minus Query 43719 AATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAG 43778 ||||||| ||||| ||||||||||||||| | || | || || |||||||| || || | Sbjct 443574 AATATCACGACATCTGGCAAATGTACAAACAGGCCGAAGCTTCCTTTTGGACTGCCGAGG 443515 Query 43779 AAGTTGATTTGACTAAAGACTTAGCAC-ATTGGATTG--CATTAAAACCACAA-GAAAAA 43834 || | || ||| || || || ||| | |||| | | | ||| |||| || || Sbjct 443514 AAATAGACTTGGGAAAGGATTT-GCATGACTGGAATAATCGTATGAACGACAATGAGAAG 443456 Query 43835 CATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAAT 43894 ||||||| ||| ||| | || ||||||||||| || || || |||||||||||| Sbjct 443455 TATTTTATCTCTAGAGTTCTTGCCTTTTTTGCTGCCTCTGATGGTATTGTCAATGAAAAT 443396 Query 43895 TTGGTTAGTCGGTTT-GCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTT 43953 ||||| || |||| || |||||| | || |||||| ||||||||| || || Sbjct 443395 TTGGTGGAAAACTTCAGCGCT-GAGGTTCAACTTCCCGAAGCAAAATGTTTTTACGGTTT 443337 Query 43954 TCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACAT 44013 |||||| || || || || || || |||| ||| | |||| ||||| ||||| Sbjct 443336 TCAAATCATGATGGAGAACATCCACTCCGAAACTTACTCATTGTTGATTGATACTTACAT 443277 Query 44014 CAAAGATGGGCACGAGAAGCATCGA----TTGTTTAATGCGATAGAAACAGTACCTGCGA 44069 ||||||| || |||| | ||| ||||| ||||| || || || | || | Sbjct 443276 CAAAGATC--CAAAAGAATC--CGAATTCTTGTTCAATGCCATCGAGACCATTCCATGTA 443221 Query 44070 TTAAACATAAAGCAGACTGGGCCCTTAAATGGATAA---ATTCAAATGATTCTTTTGGAG 44126 | ||| | || || ||||||||| | | |||||| || ||| || || | | Sbjct 443220 TCAAAGAAAAGGCTGACTGGGCCATGAGATGGATTGCCGATGACGATGCTTTGTTCGCTG 443161 Query 44127 AACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCA 44186 |||| | || || || || | ||| ||||| || |||||||| || || || || | | Sbjct 443160 AACGTTTGGTTGCCTTCGCTGCTGTTGAAGGTATCTTCTTTTCGGGCTCTTTCGCTTCTA 443101 Query 44187 TATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAA 44246 | || ||||| || || ||||| | ||||| || ||||| || || |||||| | || Sbjct 443100 TCTTCTGGTTGAAAAAGAGAGGTCTTATGCCAGGTTTGACCTTCTCCAATGAGCTTATTT 443041 Query 44247 GTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATATCTAGGAGACG 44306 | | |||||||| ||||| ||| |||||||||||| || || | || | | | Sbjct 443040 GCAGAGATGAAGGATTACACACCGACTTTGCTTGCTTGCTA-TTCTCTCACTTGAACAAC 442982 Query 44307 ATAAGCCTTCATGTAAGACAA---TTACAGATATTGTTGTAGAGGCAGTAAAGATAGAAC 44363 | |||| || || || || | | ||| || |||||| || |||| ||| Sbjct 442981 A-GAGCC----AGTGAGGAAATCGTTGAAAAGATTATTACAGAGGCTGTCGAGATTGAAA 442927 Query 44364 AAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAA-TGAACTTTTGATG 44422 || || | ||| || | ||||| || | |||||||| || | |||||| Sbjct 442926 AAAGATACTTCACAGATGCTCTTCCTGTTTCCTTGCTGGGAATGAACTGCA-GCTTGATG 442868 Query 44423 AACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTGCGATAAACAC 44482 ||| ||| |||| | | |||| ||| | |||| | | ||||| | | ||| Sbjct 442867 TGCCAGTATGTTGAGTTCGTTGCTGATAGACTACTGGTAGCTCTGGGCAACAAAAAAGTG 442808 Query 44483 TATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAAC 44542 || | || || || |||||||| ||||| || ||||| |||| || || || ||| Sbjct 442807 TACAACGTCACCAATCCATTTGATTTCATGGAGAACATTTCTTTGGCTGGTAAGACCAAC 442748 Query 44543 TTTTTTGAAAA 44553 || || ||||| Sbjct 442747 TTCTTCGAAAA 442737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397455946716055