Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F001708105.1_202016-08-12] 11 sequences; 9,597,535 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1 197 2e-45 seq2 114 2e-20 >seq1 Length=3325186 Score = 197 bits (218), Expect = 2e-45 Identities = 887/1388 (64%), Gaps = 43/1388 (3%) Strand=Plus/Minus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||||||||| | || || ||||| || || || || | |||||| || || | || || Sbjct 2236723 GTAGATGTTAGAAGTATAAGGTTCGAAACACTCGTTGTAACCCAAAATCTGGGAAGTTGA 2236664 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC 110826 || || ||||| ||||| | | ||| ||| | |||||| || | || | Sbjct 2236663 AGCAGTAGGCATAGGTGCAACTAGAAGCGAGTTTCTAAGACCTGTCGAAATAATCTTGGC 2236604 Query 110827 CTTGAGAACATCCCAGTCGTA--GTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGA 110884 ||||| ||||| || | | | || | ||| ||||||| ||| |||| Sbjct 2236603 TTTGAGTGACTCCCATTCCCACAGCTCAGAGGGCTTTTTG--TCCCACAAATCATACTGC 2236546 Query 110885 AGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCC 110944 | | || || || || |||||||| | ||||||||| || | |||| | | || Sbjct 2236545 AAAATACCCTGAGATGCTGGAGAACCTTGAAAGGTTTCGTAAGCTCCTTCCTCAACGGCT 2236486 Query 110945 AATTCACAGCTCG---CCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTC 111001 ||||| ||||| | |||| || | | || || || ||||| || || | ||| Sbjct 2236485 AATTC---GCTCGAGGCTTCCAAGGCTCCATGGTAGATAGTTTCGAAAATCTGGATATTA 2236429 Query 111002 ATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGA 111061 | | ||| || || |||||||||| | | || || || |||| || | | Sbjct 2236428 AGTTGCTTAGCCTCTGGAGAATCAAATGGGATTCTCAACTTCATGAAAGCATCAGCTAAA 2236369 Query 111062 CCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTC---A 111118 ||||||||||| | | |||| ||||| | ||||| || || || | || ||| | Sbjct 2236368 CCTTGAACACCAACAGCAATTGGTCTATTACGCATGTTGGA---TCTCCTAGCCTCTGGA 2236312 Query 111119 ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATT 111178 || || || | |||||||| || | || ||| | || || || | ||| ||||| Sbjct 2236311 ACCGGGTAGTAGTTTCTGTCGATAATTCTGTTCAAGTTACGAGTGACCACCTTCGTGATG 2236252 Query 111179 TCATGAAGTTTTTCATA-----ATCAAAAGTGCGAGTCTCTTC---ATTGACATACTTTG 111230 ||||| || |||||| | | ||| ||| |||| || || | ||| | || Sbjct 2236251 TCATGCAGCTTTTCAAAGTTGTACCAACAGT--GAGTATCATCGGTTTCAACAAAGGCTG 2236194 Query 111231 GAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAA 111290 |||| || || || ||||| || || ||||| || || || | ||||| | || Sbjct 2236193 GAAGAGCAATAGAAGCCAAGTTACAGACAGCAGTTTCTTCTGGGGAAGAATACTCAACAA 2236134 Query 111291 TTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGT 111350 | || ||| | ||| || ||||| ||||| ||||| ||||| | ||||||| Sbjct 2236133 TCTCACAACAAAGGTTAGAGGATTTAATGACACCCAAGTTCTTCTGGTTGGTTTTCTTGT 2236074 Query 111351 TGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAG 111410 | || |||||||| || | |||| | || || || || || ||||||| | ||| || | Sbjct 2236073 TACAAGCATCCTTATACAACATGAATGGAGTACCGGTTTCTGTCTGTGCCTCGAGGATGG 2236014 Query 111411 CCTTCCAAACATCGGCGGC--TGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTT 111468 | | ||||| | ||| || | || | | | || || ||| ||||| | Sbjct 2236013 CGTACCAAAGCTTTTGGGCTTTGATGGTTTGTC--TTCCACGACCTTCCTTTTCGTATCT 2235956 Query 111469 TGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGG 111528 | ||| || ||||||| || || || |||||| || || || |||| ||| Sbjct 2235955 TTCGTACAGTTCTTCAAATTCATCGCCGTAGACGTCGGCAAGGCCAGGAGCCTCACTTGG 2235896 Query 111529 ACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCA 111588 | |||| || | ||||| ||| | || |||| |||||||| || || || ||||| Sbjct 2235895 AGAGAACAGGGTCCATTCGCCATTCTGTTCGACCCTTTTCATGAACAGATCAGGGATCCA 2235836 Query 111589 CAGGGATGAAAAGAGATCTCT-ACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACT 111647 || | | || |||||||| | | || || || | || ||||| || | | Sbjct 2235835 TAGAGCCGGGAATAGATCTCTGGCTCTGA-TTTCCTCTTTTCCATGGTTCTTACGAATGT 2235777 Query 111648 CAAGGAACTCCATGATATCCGCGTGCCATGGCT-CAAG---ATAG--ACTGCGATAGATC 111701 ||| || | | ||| ||||| |||||||| | |||| | || | ||| || | Sbjct 2235776 CAATAAAGGCGAAGATGTCCGCATGCCATGGTTCCAAGTACAAAGCAAATGCACCAGGGC 2235717 Query 111702 CCTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTG 111761 ||| | ||| |||||| ||||| || || ||| ||| || || | | ||||| Sbjct 2235716 GCTTGTTA---CCACCTTGATCAACATAACGAGCGGTGTTGTTGAAAACTCTCACCATTG 2235660 Query 111762 GAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACAT 111821 |||||||||| | || ||| || || || ||| ||| |||| | | || Sbjct 2235659 GAATAATACCGTTCGAAGTACCGTTAGTACCAGCAATGTAGGATCCTGTGGCACGAATAT 2235600 Query 111822 CATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAG 111881 ||| ||||||| ||||| || ||||| || || ||| ||||| ||| | | || Sbjct 2235599 TATGAATGTGCAAACCAATTCCACCAGCAGTTTTGGAAATTAAAGCACATTCCTTCAAAG 2235540 Query 111882 TTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCT 111941 | |||| ||||| | || ||||| ||| |||| | | ||| || ||||| | Sbjct 2235539 TATCATAAATACCTTCAATCGAGTCATCCCGCATGGCAACTAAGAAACATGACGACATTT 2235480 Query 111942 GCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGG 112000 | || || |||||||| || || || || || | |||||| |||| |||| | || Sbjct 2235479 GTGGGTGAGGGGTACCAGCGTTAAACAGAGTAGGAGAGGCGTGAGTGAA-ATACTTCTGA 2235421 Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060 ||| || ||| || || | || ||||||| || || || || ||||| ||| Sbjct 2235420 CTCATAAAGTTGTAGGTTTCAATAACCCTTGCAATGTCATCACCATGAATACCGATAGCG 2235361 Query 112061 ACCCGCAT 112068 || ||||| Sbjct 2235360 ACACGCAT 2235353 >seq2 Length=2687137 Score = 114 bits (126), Expect = 2e-20 Identities = 384/588 (65%), Gaps = 25/588 (4%) Strand=Plus/Plus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| | || ||||||| | ||||||| ||||| |||||| | |||| Sbjct 443010 GCAAAGTCGGTGTGTAATCCTTCATCTCTGCAAATAAGCTCATTGGAGAAGGTCAAACCT 443069 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||| ||||| | ||| |||||||| | |||| ||| || || || ||||||||| Sbjct 443070 GGCATAAGACCTCTCTTTTTCAACCAGAAGATAGAAGCGAAAGAGCCCGAAAAGAAGATA 443129 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCAT---CA 122835 || || ||| || || |||| | ||||| ||||| | || | ||| || Sbjct 443130 CCTTCAACAGCAGCGAAGGCAACCAAACGTTCAGCGAACAA---AGCATCGTCATCGGCA 443186 Query 122836 AACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCA 122895 | |||| |||| ||||| | ||||| | | |||||||| | || | |||||| | Sbjct 443187 ATCCATCTCATGGCCCAGTCAGCCTTTTCTTTGATACATGGAATGGTCTCGATGGCATTG 443246 Query 122896 AATAA-----CTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAAT 122950 || || | | |||||| | ||| || ||||| | |||||||| ||| | Sbjct 443247 AACAAGAATTCGGATTCTTT-----TGGATCTTTGATGTAAGTATCAATCAACAATGAGT 443301 Query 122951 ATGTTTCGCCATGAACCAT-TTCATTATGGCATTGATATGCGTAGAATGAGCGCGCTTCG 123009 | |||||| || | | | ||| || | |||| | |||| || | |||||| Sbjct 443302 AAGTTTCGGAGTGGATGTTCTCCATCAT-GATTTGAAAACCGTAAAAACATTTTGCTTCG 443360 Query 123010 CTTATCTGAACCTCATCCGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGAC 123069 | ||||||||| | || || | | ||| ||| ||||| ||||| || Sbjct 443361 GGAAGTTGAACCTCAGCGCTGAAGTTTTCCACCAAATTTTCATTGACAATACCATCAGAG 443420 Query 123070 CCAGCAAAGAATGCCAGGA-TGTACTTTATGAATTTCTTTTCATTTTCATTCA---GGGT 123125 ||||||| || || || | | || || || | ||| ||||| || |||| | | Sbjct 443421 GCAGCAAAAAAGGCAAGAACTCTA-GAGATAAAATACTTCTCATTGTCGTTCATACGATT 443479 Query 123126 CTTCCAGTCGTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCAATTGCTCATTTG 123185 |||||||| | | ||| || ||| || | ||| || ||||||||| | || Sbjct 443480 ATTCCAGTCATGCAAATCCTTTCCCAAGTCTATTTCCTCGGCAGTCCAAAAGGAAGCTTC 443539 Query 123186 AGCCTTTTTATAGAGTTCCCAGA-GTTGTGGATACTTCAGGGGGAAGA 123232 |||| ||| || | || ||||| || || |||| |||| ||||||| Sbjct 443540 GGCCTGTTTGTACATTTGCCAGATGTCGT-GATATTTCAAAGGGAAGA 443586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031913645600