Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F001708105.1_202016-08-12]
11 sequences; 9,597,535 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq1 210 3e-49
seq3 87.8 2e-12
seq2 82.4 9e-11
>seq1
Length=3325186
Score = 210 bits (232), Expect = 3e-49
Identities = 788/1219 (65%), Gaps = 25/1219 (2%)
Strand=Plus/Plus
Query 104237 ATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTCTTGGAGACATACGAC 104296
||||| || || |||||||||||||| || ||||||| || | || || ||| ||
Sbjct 2235353 ATGCGTGTCGCTATCGGTATTCATGGTGATGACATTGCAAGGGTTATTGAAACCTACAAC 2235412
Query 104297 AAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACC 104355
||| || | |||| |||| |||||| | || || || || || |||||||| ||
Sbjct 2235413 TTTATGAGTCAGAAGTAT-TTCACTCACGCCTCTCCTACTCTGTTTAACGCTGGTACCCC 2235471
Query 104356 AAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTAT 104415
|| |||||||| || ||| | | |||| ||| ||||| || | |||||
Sbjct 2235472 TCACCCACAAATGTCGTCATGTTTCTTAGTTGCCATGCGGGATGACTCGATTGAAGGTAT 2235531
Query 104416 CTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCA 104475
|||| ||| | | ||| ||||| ||| || || ||||| || ||||| ||||
Sbjct 2235532 TTATGATACTTTGAAGGAATGTGCTTTAATTTCCAAAACTGCTGGTGGAATTGGTTTGCA 2235591
Query 104476 CATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGG 104535
||| ||| || | | |||| ||| ||| || || || ||| || | ||
Sbjct 2235592 CATTCATAATATTCGTGCCACAGGATCCTACATTGCTGGTACTAACGGTACTTCGAACGG 2235651
Query 104536 TATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCTGGGCG 104595
||||||||||||| | | || || ||| ||| || || ||||| |||||| || |
Sbjct 2235652 TATTATTCCAATGGTGAGAGTTTTCAACAACACCGCTCGTTATGTTGATCAAGGTG---G 2235708
Query 104596 TCGAAAGGGATCTATCGCAGT--CTAT---CTT-GAGCCATGGCACGCGGATATCATGGA 104649
| ||| | || ||| | || | ||| || |||||||| ||||| ||| | |
Sbjct 2235709 TAACAAGCGCCCTGGTGCATTTGCTTTGTACTTGGAACCATGGCATGCGGACATCTTCGC 2235768
Query 104650 GTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCC-GCGATCTCTTCT 104708
|| |||| | ||| ||||| || | ||||| | | ||| | ||||| |||
Sbjct 2235769 CTTTATTGACATTCGTAAGAACCATGGAAAAGAGGA-AATCAGAGCCAGAGATCTATTCC 2235827
Query 104709 CCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTC 104768
| ||||| ||||| || ||||| |||||||| || || || ||| |||| | ||| | |
Sbjct 2235828 CGGCTCTATGGATCCCTGATCTGTTCATGAAAAGGGTCGAACAGAATGGCGAATGGACCC 2235887
Query 104769 TCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCC 104828
| || | |||| |||| ||||| || |||| | | || || || ||||||| |
Sbjct 2235888 TGTTCTCTCCAAGTGAGGCTCCTGGCCTTGCCGACGTCTACGGCGATGAATTTGAAGAAC 2235947
Query 104829 TTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGCCAGCTGCCGATGTGT 104888
| ||| || ||||| | |||||||| | | || | ||| | | |
Sbjct 2235948 TGTACGAAAGATACGAAAAGGAAGGTCGTGGAAGACAAACCATCAAAGCCCAAAAGCTTT 2236007
Query 104889 GGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACG 104948
|| | || || ||| || | || || || || ||||| |||| |||| | || || || |
Sbjct 2236008 GGTACGCCATCCTCGAGGCACAGACAGAAACCGGTACTCCATTCATGTTGTATAAGGATG 2236067
Query 104949 CCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTA 105008
| |||||| | || | || || ||||| |||||||| || || || || || |||
Sbjct 2236068 CTTGTAACAAGAAAACCAACCAGAAGAACTTGGGTGTCATTAAATCCTCTAACCTTTGTT 2236127
Query 105009 CAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCG 105068
|| || | || | | | | ||| || || ||||| |||||| | || || || |
Sbjct 2236128 GTGAGATTGTTGAGTATTCTTCCCCAGAAGAAACTGCTGTCTGTAACTTGGCTTCTATTG 2236187
Query 105069 CTCTCCCCAAGTATGTGGATCCAGA-GACAAAGACATTTG-----ATTATGAAAAACTCC 105122
|||| || | ||| || | || || | || ||| | | |||||| || |
Sbjct 2236188 CTCTTCCAGCCTTTGTTGAAACCGATGATACTCACTGTTGGTACAACTTTGAAAAGCTGC 2236247
Query 105123 ACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACC 105182
| || | ||||| ||||| ||| | |||||| |||| || ||||| | ||||
Sbjct 2236248 ATGACATCACGAAGGTGGTCACTCGTAACTTGAACAGAATTATCGACAGAAACTACTACC 2236307
Query 105183 CCGTT-GAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAG 105241
| ||| ||| ||| | | ||| || ||| | | | ||||||| | | ||||||||
Sbjct 2236308 CGGTTCCAGA-GGCTAGGAGATCCAACATGCGTAATAGACCAATTGCTGTTGGTGTTCAA 2236366
Query 105242 GGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAA 105301
||| | || |||| ||||| | | | |||||||||| || || ||| ||
Sbjct 2236367 GGTTTAGCTGATGCTTTCATGAAGTTGAGAATCCCATTTGATTCTCCAGAGGCTAAGCAA 2236426
Query 105302 ATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTG--AGGCGAGTTCAGAGT 105359
| ||| | || || || || || || || | || |||| || | | | || |
Sbjct 2236427 CTTAATATCCAGATTTTCGAAACTATCTACCATGGAGC-CTTGGAAGCCTCGAGC-GAAT 2236484
Query 105360 TGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGC 105419
| || | | || || | || ||||||||| | ||||||||||| || || || |
Sbjct 2236485 TAGCCGTTGAGGAAGGAGCTTACGAAACCTTTCAAGGTTCTCCAGCATCTCAGGGTATTT 2236544
Query 105420 TTCAATTTGATATGTGGGA 105438
| || | |||| |||||||
Sbjct 2236545 TGCAGTATGATTTGTGGGA 2236563
>seq3
Length=1828518
Score = 87.8 bits (96), Expect = 2e-12
Identities = 210/313 (67%), Gaps = 11/313 (4%)
Strand=Plus/Plus
Query 9695 TTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACT 9754
||||| | |||||| || ||||||| |||| || | || || ||| || || |
Sbjct 1567937 TTTCCAATGGCATCGATTTCATCAACAAAGATAATACTAGGAGCATCTTCTCGTGCTGTT 1567996
Query 9755 TCAAAGAGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTG 9812
| ||| ||||| || || | ||| || || ||||| |||||||| |||||||| | ||
Sbjct 1567997 TTAAAAAGATCACGAACTC--TTGAAGCTCCAACACCCACAAACATTTCCACAAATTCTG 1568054
Query 9813 CGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 9872
| ||| | | || || ||| || |||||| || |||| || | |||||
Sbjct 1568055 AACCAGAAACTGAGTAAAATGGAACACCAGCTTCACCAGCTGTGGCCTTTGCCAAAAGAG 1568114
Query 9873 TCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC---AC 9929
||||||| |||||||| ||| | || | ||||||| |||||| || || || |
Sbjct 1568115 TCTTACCAGTACCTGGAGGACCAGAAAGAATAGCACCTCTTGGAATTTTAGCTCCTAGCC 1568174
Query 9930 TTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATTTCTTCCAATTCATCTTTGG 9989
|| | |||| | |||| | ||| | ||| | |||| || | ||| |||||||
Sbjct 1568175 TTTC---GTATTTGGCAGGGTTCTTCAAAAACTTGACAAACTCCATTATTTCCTCTTTGG 1568231
Query 9990 CGGCGTCA-ATCC 10001
| ||||| ||||
Sbjct 1568232 CTTCGTCACATCC 1568244
>seq2
Length=2687137
Score = 82.4 bits (90), Expect = 9e-11
Identities = 160/234 (68%), Gaps = 2/234 (1%)
Strand=Plus/Minus
Query 94723 GCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT 94782
|||||| | || |||| ||||| || | || || || ||||| |||| ||| |||
Sbjct 443242 GCCATCGAGACCATTCCATGTATCAAAGAAAAGGCTGACTGGGCCATGAGATGGATTGCC 443183
Query 94783 -ACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTT 94841
| | | || || || ||||| || | | || || || |||||| ||||||||
Sbjct 443182 GATGACGATGCTTTG-TTCGCTGAACGTTTGGTTGCCTTCGCTGCTGTTGAAGGTATCTT 443124
Query 94842 CTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCT 94901
||| || || || ||| |||| | ||| | || ||| ||||||| ||||||||| |
Sbjct 443123 CTTTTCGGGCTCTTTCGCTTCTATCTTCTGGTTGAAAAAGAGAGGTCTTATGCCAGGTTT 443064
Query 94902 CTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955
||||||||| |||||||| | | || || ||| | ||| || |||||
Sbjct 443063 GACCTTCTCCAATGAGCTTATTTGCAGAGATGAAGGATTACACACCGACTTTGC 443010
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583260719801640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |