Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F001708105.1_202016-08-12] 11 sequences; 9,597,535 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1 210 3e-49 seq3 87.8 2e-12 seq2 82.4 9e-11 >seq1 Length=3325186 Score = 210 bits (232), Expect = 3e-49 Identities = 788/1219 (65%), Gaps = 25/1219 (2%) Strand=Plus/Plus Query 104237 ATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTCTTGGAGACATACGAC 104296 ||||| || || |||||||||||||| || ||||||| || | || || ||| || Sbjct 2235353 ATGCGTGTCGCTATCGGTATTCATGGTGATGACATTGCAAGGGTTATTGAAACCTACAAC 2235412 Query 104297 AAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACC 104355 ||| || | |||| |||| |||||| | || || || || || |||||||| || Sbjct 2235413 TTTATGAGTCAGAAGTAT-TTCACTCACGCCTCTCCTACTCTGTTTAACGCTGGTACCCC 2235471 Query 104356 AAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTAT 104415 || |||||||| || ||| | | |||| ||| ||||| || | ||||| Sbjct 2235472 TCACCCACAAATGTCGTCATGTTTCTTAGTTGCCATGCGGGATGACTCGATTGAAGGTAT 2235531 Query 104416 CTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCA 104475 |||| ||| | | ||| ||||| ||| || || ||||| || ||||| |||| Sbjct 2235532 TTATGATACTTTGAAGGAATGTGCTTTAATTTCCAAAACTGCTGGTGGAATTGGTTTGCA 2235591 Query 104476 CATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGG 104535 ||| ||| || | | |||| ||| ||| || || || ||| || | || Sbjct 2235592 CATTCATAATATTCGTGCCACAGGATCCTACATTGCTGGTACTAACGGTACTTCGAACGG 2235651 Query 104536 TATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCTGGGCG 104595 ||||||||||||| | | || || ||| ||| || || ||||| |||||| || | Sbjct 2235652 TATTATTCCAATGGTGAGAGTTTTCAACAACACCGCTCGTTATGTTGATCAAGGTG---G 2235708 Query 104596 TCGAAAGGGATCTATCGCAGT--CTAT---CTT-GAGCCATGGCACGCGGATATCATGGA 104649 | ||| | || ||| | || | ||| || |||||||| ||||| ||| | | Sbjct 2235709 TAACAAGCGCCCTGGTGCATTTGCTTTGTACTTGGAACCATGGCATGCGGACATCTTCGC 2235768 Query 104650 GTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCC-GCGATCTCTTCT 104708 || |||| | ||| ||||| || | ||||| | | ||| | ||||| ||| Sbjct 2235769 CTTTATTGACATTCGTAAGAACCATGGAAAAGAGGA-AATCAGAGCCAGAGATCTATTCC 2235827 Query 104709 CCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTC 104768 | ||||| ||||| || ||||| |||||||| || || || ||| |||| | ||| | | Sbjct 2235828 CGGCTCTATGGATCCCTGATCTGTTCATGAAAAGGGTCGAACAGAATGGCGAATGGACCC 2235887 Query 104769 TCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCC 104828 | || | |||| |||| ||||| || |||| | | || || || ||||||| | Sbjct 2235888 TGTTCTCTCCAAGTGAGGCTCCTGGCCTTGCCGACGTCTACGGCGATGAATTTGAAGAAC 2235947 Query 104829 TTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGCCAGCTGCCGATGTGT 104888 | ||| || ||||| | |||||||| | | || | ||| | | | Sbjct 2235948 TGTACGAAAGATACGAAAAGGAAGGTCGTGGAAGACAAACCATCAAAGCCCAAAAGCTTT 2236007 Query 104889 GGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACG 104948 || | || || ||| || | || || || || ||||| |||| |||| | || || || | Sbjct 2236008 GGTACGCCATCCTCGAGGCACAGACAGAAACCGGTACTCCATTCATGTTGTATAAGGATG 2236067 Query 104949 CCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTA 105008 | |||||| | || | || || ||||| |||||||| || || || || || ||| Sbjct 2236068 CTTGTAACAAGAAAACCAACCAGAAGAACTTGGGTGTCATTAAATCCTCTAACCTTTGTT 2236127 Query 105009 CAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCG 105068 || || | || | | | | ||| || || ||||| |||||| | || || || | Sbjct 2236128 GTGAGATTGTTGAGTATTCTTCCCCAGAAGAAACTGCTGTCTGTAACTTGGCTTCTATTG 2236187 Query 105069 CTCTCCCCAAGTATGTGGATCCAGA-GACAAAGACATTTG-----ATTATGAAAAACTCC 105122 |||| || | ||| || | || || | || ||| | | |||||| || | Sbjct 2236188 CTCTTCCAGCCTTTGTTGAAACCGATGATACTCACTGTTGGTACAACTTTGAAAAGCTGC 2236247 Query 105123 ACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACC 105182 | || | ||||| ||||| ||| | |||||| |||| || ||||| | |||| Sbjct 2236248 ATGACATCACGAAGGTGGTCACTCGTAACTTGAACAGAATTATCGACAGAAACTACTACC 2236307 Query 105183 CCGTT-GAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAG 105241 | ||| ||| ||| | | ||| || ||| | | | ||||||| | | |||||||| Sbjct 2236308 CGGTTCCAGA-GGCTAGGAGATCCAACATGCGTAATAGACCAATTGCTGTTGGTGTTCAA 2236366 Query 105242 GGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAA 105301 ||| | || |||| ||||| | | | |||||||||| || || ||| || Sbjct 2236367 GGTTTAGCTGATGCTTTCATGAAGTTGAGAATCCCATTTGATTCTCCAGAGGCTAAGCAA 2236426 Query 105302 ATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTG--AGGCGAGTTCAGAGT 105359 | ||| | || || || || || || || | || |||| || | | | || | Sbjct 2236427 CTTAATATCCAGATTTTCGAAACTATCTACCATGGAGC-CTTGGAAGCCTCGAGC-GAAT 2236484 Query 105360 TGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGC 105419 | || | | || || | || ||||||||| | ||||||||||| || || || | Sbjct 2236485 TAGCCGTTGAGGAAGGAGCTTACGAAACCTTTCAAGGTTCTCCAGCATCTCAGGGTATTT 2236544 Query 105420 TTCAATTTGATATGTGGGA 105438 | || | |||| ||||||| Sbjct 2236545 TGCAGTATGATTTGTGGGA 2236563 >seq3 Length=1828518 Score = 87.8 bits (96), Expect = 2e-12 Identities = 210/313 (67%), Gaps = 11/313 (4%) Strand=Plus/Plus Query 9695 TTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACT 9754 ||||| | |||||| || ||||||| |||| || | || || ||| || || | Sbjct 1567937 TTTCCAATGGCATCGATTTCATCAACAAAGATAATACTAGGAGCATCTTCTCGTGCTGTT 1567996 Query 9755 TCAAAGAGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTG 9812 | ||| ||||| || || | ||| || || ||||| |||||||| |||||||| | || Sbjct 1567997 TTAAAAAGATCACGAACTC--TTGAAGCTCCAACACCCACAAACATTTCCACAAATTCTG 1568054 Query 9813 CGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 9872 | ||| | | || || ||| || |||||| || |||| || | ||||| Sbjct 1568055 AACCAGAAACTGAGTAAAATGGAACACCAGCTTCACCAGCTGTGGCCTTTGCCAAAAGAG 1568114 Query 9873 TCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC---AC 9929 ||||||| |||||||| ||| | || | ||||||| |||||| || || || | Sbjct 1568115 TCTTACCAGTACCTGGAGGACCAGAAAGAATAGCACCTCTTGGAATTTTAGCTCCTAGCC 1568174 Query 9930 TTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATTTCTTCCAATTCATCTTTGG 9989 || | |||| | |||| | ||| | ||| | |||| || | ||| ||||||| Sbjct 1568175 TTTC---GTATTTGGCAGGGTTCTTCAAAAACTTGACAAACTCCATTATTTCCTCTTTGG 1568231 Query 9990 CGGCGTCA-ATCC 10001 | ||||| |||| Sbjct 1568232 CTTCGTCACATCC 1568244 >seq2 Length=2687137 Score = 82.4 bits (90), Expect = 9e-11 Identities = 160/234 (68%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 94723 GCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT 94782 |||||| | || |||| ||||| || | || || || ||||| |||| ||| ||| Sbjct 443242 GCCATCGAGACCATTCCATGTATCAAAGAAAAGGCTGACTGGGCCATGAGATGGATTGCC 443183 Query 94783 -ACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTT 94841 | | | || || || ||||| || | | || || || |||||| |||||||| Sbjct 443182 GATGACGATGCTTTG-TTCGCTGAACGTTTGGTTGCCTTCGCTGCTGTTGAAGGTATCTT 443124 Query 94842 CTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCT 94901 ||| || || || ||| |||| | ||| | || ||| ||||||| ||||||||| | Sbjct 443123 CTTTTCGGGCTCTTTCGCTTCTATCTTCTGGTTGAAAAAGAGAGGTCTTATGCCAGGTTT 443064 Query 94902 CTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||||||||| |||||||| | | || || ||| | ||| || ||||| Sbjct 443063 GACCTTCTCCAATGAGCTTATTTGCAGAGATGAAGGATTACACACCGACTTTGC 443010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260719801640