Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F001708105.1_202016-08-12] 11 sequences; 9,597,535 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1 152 6e-32 seq2 84.2 2e-11 >seq1 Length=3325186 Score = 152 bits (168), Expect = 6e-32 Identities = 497/765 (65%), Gaps = 8/765 (1%) Strand=Plus/Plus Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACGAC 53254 ||||| ||||| | ||||| || ||||| ||| | | || ||| || ||| || Sbjct 2235353 ATGCGTGTCGCTATCGGTATTCATGGTGATGACATTGCAAGGGTTATTGAAACCTACAAC 2235412 Query 53255 TTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAAT 53314 || ||||| || ||||| || || |||||| | || || ||||| ||||||||||| | Sbjct 2235413 TTTATGAGTCAGAAGTATTTCACTCACGCCTCTCCTACTCTGTTTAACGCTGGTACCCCT 2235472 Query 53315 CACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATC 53374 ||||| || |||||| || ||| | || || ||| |||||||||||| || || || Sbjct 2235473 CACCCACAAATGTCGTCATGTTTCTTAGTTGCCATGCGGGATGACTCGATTGAAGGTATT 2235532 Query 53375 TACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCAC 53434 || || || | ||||| ||||| || ||||| | ||||| || ||| | ||| Sbjct 2235533 TATGATACTTTGAAGGAATGTGCTTTAATTTCCAAAACTGCTGGTGGAATTGGTTTGCAC 2235592 Query 53435 TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGG--CGTCGCCGATG 53492 || | ||||| | || | || || || ||||| | ||| | | Sbjct 2235593 ATTCATAATATTCGTGCCACAGGATCCTACATTGCTGGTACTAACGGTACTTCG--AACG 2235650 Query 53493 GAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTG 53552 | || | || ||| | | || ||||||||||| || || || || | || |||||| Sbjct 2235651 GTATTATTCCAATGGTGAGAGTTTTCAACAACACCGCTCGTTATGTTGATCAAGGTGGTA 2235710 Query 53553 GGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGT 53612 |||||| || | || || | ||| | || || ||||| || ||||| | | | Sbjct 2235711 ACAAGCGCCCTGGTGCATTTGCTTTGTACTTGGAACCATGGCATGCGGACATCTTCGCCT 2235770 Query 53613 TTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAG 53672 || | || | ||| ||| || || | || || || | | | || || || | | Sbjct 2235771 TTATTGACATTCGTAAGAACCATGGAAAAGAGGAAATCAGAGCCAGAGATCTATTCCCGG 2235830 Query 53673 CTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGA 53732 |||| ||||| || || || |||||| ||| ||| || || | | || ||| |||| Sbjct 2235831 CTCTATGGATCCCTGATCTGTTCATGAAAAGGGTCGAACAGAATGGCGAATGGACCCTGT 2235890 Query 53733 TGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGT 53792 | | || | ||| || ||||| | |||||||| || || ||| | || ||| Sbjct 2235891 TCTCTCCAAGTGAGGCTCCTGGCCTTGCCGACGTCTACGGCGATGAATTTGAAGAACTGT 2235950 Query 53793 ATCGGACG-TACGCAGTTCAGGGCCGCTACAAGA-AGAAGGTCAAGGCGCGTGAGGTATG 53850 | || | | |||| | | || || | |||| | | |||| || | || | || Sbjct 2235951 A-CGAAAGATACGAAAAGGAAGGTCG-TGGAAGACAAACCATCAAAGCCCAAAAGCTTTG 2236008 Query 53851 GGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTC 53910 | | || |||||| || ||| || || || || || | ||||| || |||||| | Sbjct 2236009 GTACGCCATCCTCGAGGCACAGACAGAAACCGGTACTCCATTCATGTTGTATAAGGATGC 2236068 Query 53911 GGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATC 53955 ||| |||| | ||||||||||||| | || ||||| ||||| Sbjct 2236069 TTGTAACAAGAAAACCAACCAGAAGAACTTGGGTGTCATTAAATC 2236113 Score = 89.7 bits (98), Expect = 6e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 55715 ATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTG 55774 |||||| || ||||| | |||| ||| || |||||||| | || |||| | | Sbjct 2236862 ATTCCTGAGCAACTCAAAGGCCTTTATAAGACAGTTTGGGAGATATCTCAAAAGACTATC 2236921 Query 55775 ATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTC 55834 ||||| ||| ||| || | || || |||||||| || ||||| ||||||| | Sbjct 2236922 ATTGATATGGCTGCGGACAGATCAGCCTATATCGACCAATCTCAGTCGTTGAACATTCAC 2236981 Query 55835 ATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGA 55894 || | ||| | ||| || |||| | |||||||| || || |||||||| ||| Sbjct 2236982 CTGATGTCTCCAACTATGGGTAAATTGACCAGCATGCACTTCTATGGTTGGAAGAAAGGA 2237041 Query 55895 CTCAAGACGGGTATGTACTATCTGCGGAC 55923 | ||||| ||||||||||| ||||| || Sbjct 2237042 TTAAAGACTGGTATGTACTACCTGCGTAC 2237070 >seq2 Length=2687137 Score = 84.2 bits (92), Expect = 2e-11 Identities = 193/290 (67%), Gaps = 3/290 (1%) Strand=Plus/Plus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 ||||||||||||| || | ||||| || || | | || |||||||| || | ||| Sbjct 443028 CCTTCATCTCTGCAAATAAGCTCATTGGAGAAGGTCAAACCTGGCATAAGACCTCTCTTT 443087 Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888 |||||||| ||||| | | ||| || || |||||||| ||||| ||| || ||| Sbjct 443088 TTCAACCAGAAGATAGAAGCGAAAGAGCCCGAAAAGAAGATACCTTCAACAGCAGCGAAG 443147 Query 74889 GCGACAAGGCGTTGCGCGAACGGTGCATCGGAA---GTCATCCAAGTCTGAGCCCATTCA 74945 || || | |||| |||||| |||||| | | ||||| || ||||| ||| Sbjct 443148 GCAACCAAACGTTCAGCGAACAAAGCATCGTCATCGGCAATCCATCTCATGGCCCAGTCA 443207 Query 74946 GCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCG 75005 || ||| ||||| || | || ||||| || | ||| | | | | |||| Sbjct 443208 GCCTTTTCTTTGATACATGGAATGGTCTCGATGGCATTGAACAAGAATTCGGATTCTTTT 443267 Query 75006 GGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAAT 75055 ||||| |||| | | ||||||| | |||||| || || || || || Sbjct 443268 GGATCTTTGATGTAAGTATCAATCAACAATGAGTAAGTTTCGGAGTGGAT 443317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215924757800