Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F001708105.1_202016-08-12]
11 sequences; 9,597,535 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq1 152 6e-32
seq2 84.2 2e-11
>seq1
Length=3325186
Score = 152 bits (168), Expect = 6e-32
Identities = 497/765 (65%), Gaps = 8/765 (1%)
Strand=Plus/Plus
Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACGAC 53254
||||| ||||| | ||||| || ||||| ||| | | || ||| || ||| ||
Sbjct 2235353 ATGCGTGTCGCTATCGGTATTCATGGTGATGACATTGCAAGGGTTATTGAAACCTACAAC 2235412
Query 53255 TTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAAT 53314
|| ||||| || ||||| || || |||||| | || || ||||| ||||||||||| |
Sbjct 2235413 TTTATGAGTCAGAAGTATTTCACTCACGCCTCTCCTACTCTGTTTAACGCTGGTACCCCT 2235472
Query 53315 CACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATC 53374
||||| || |||||| || ||| | || || ||| |||||||||||| || || ||
Sbjct 2235473 CACCCACAAATGTCGTCATGTTTCTTAGTTGCCATGCGGGATGACTCGATTGAAGGTATT 2235532
Query 53375 TACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCAC 53434
|| || || | ||||| ||||| || ||||| | ||||| || ||| | |||
Sbjct 2235533 TATGATACTTTGAAGGAATGTGCTTTAATTTCCAAAACTGCTGGTGGAATTGGTTTGCAC 2235592
Query 53435 TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGG--CGTCGCCGATG 53492
|| | ||||| | || | || || || ||||| | ||| | |
Sbjct 2235593 ATTCATAATATTCGTGCCACAGGATCCTACATTGCTGGTACTAACGGTACTTCG--AACG 2235650
Query 53493 GAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTG 53552
| || | || ||| | | || ||||||||||| || || || || | || ||||||
Sbjct 2235651 GTATTATTCCAATGGTGAGAGTTTTCAACAACACCGCTCGTTATGTTGATCAAGGTGGTA 2235710
Query 53553 GGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGT 53612
|||||| || | || || | ||| | || || ||||| || ||||| | | |
Sbjct 2235711 ACAAGCGCCCTGGTGCATTTGCTTTGTACTTGGAACCATGGCATGCGGACATCTTCGCCT 2235770
Query 53613 TTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAG 53672
|| | || | ||| ||| || || | || || || | | | || || || | |
Sbjct 2235771 TTATTGACATTCGTAAGAACCATGGAAAAGAGGAAATCAGAGCCAGAGATCTATTCCCGG 2235830
Query 53673 CTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGA 53732
|||| ||||| || || || |||||| ||| ||| || || | | || ||| ||||
Sbjct 2235831 CTCTATGGATCCCTGATCTGTTCATGAAAAGGGTCGAACAGAATGGCGAATGGACCCTGT 2235890
Query 53733 TGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGT 53792
| | || | ||| || ||||| | |||||||| || || ||| | || |||
Sbjct 2235891 TCTCTCCAAGTGAGGCTCCTGGCCTTGCCGACGTCTACGGCGATGAATTTGAAGAACTGT 2235950
Query 53793 ATCGGACG-TACGCAGTTCAGGGCCGCTACAAGA-AGAAGGTCAAGGCGCGTGAGGTATG 53850
| || | | |||| | | || || | |||| | | |||| || | || | ||
Sbjct 2235951 A-CGAAAGATACGAAAAGGAAGGTCG-TGGAAGACAAACCATCAAAGCCCAAAAGCTTTG 2236008
Query 53851 GGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTC 53910
| | || |||||| || ||| || || || || || | ||||| || |||||| |
Sbjct 2236009 GTACGCCATCCTCGAGGCACAGACAGAAACCGGTACTCCATTCATGTTGTATAAGGATGC 2236068
Query 53911 GGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATC 53955
||| |||| | ||||||||||||| | || ||||| |||||
Sbjct 2236069 TTGTAACAAGAAAACCAACCAGAAGAACTTGGGTGTCATTAAATC 2236113
Score = 89.7 bits (98), Expect = 6e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 55715 ATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTG 55774
|||||| || ||||| | |||| ||| || |||||||| | || |||| | |
Sbjct 2236862 ATTCCTGAGCAACTCAAAGGCCTTTATAAGACAGTTTGGGAGATATCTCAAAAGACTATC 2236921
Query 55775 ATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTC 55834
||||| ||| ||| || | || || |||||||| || ||||| ||||||| |
Sbjct 2236922 ATTGATATGGCTGCGGACAGATCAGCCTATATCGACCAATCTCAGTCGTTGAACATTCAC 2236981
Query 55835 ATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGA 55894
|| | ||| | ||| || |||| | |||||||| || || |||||||| |||
Sbjct 2236982 CTGATGTCTCCAACTATGGGTAAATTGACCAGCATGCACTTCTATGGTTGGAAGAAAGGA 2237041
Query 55895 CTCAAGACGGGTATGTACTATCTGCGGAC 55923
| ||||| ||||||||||| ||||| ||
Sbjct 2237042 TTAAAGACTGGTATGTACTACCTGCGTAC 2237070
>seq2
Length=2687137
Score = 84.2 bits (92), Expect = 2e-11
Identities = 193/290 (67%), Gaps = 3/290 (1%)
Strand=Plus/Plus
Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828
||||||||||||| || | ||||| || || | | || |||||||| || | |||
Sbjct 443028 CCTTCATCTCTGCAAATAAGCTCATTGGAGAAGGTCAAACCTGGCATAAGACCTCTCTTT 443087
Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888
|||||||| ||||| | | ||| || || |||||||| ||||| ||| || |||
Sbjct 443088 TTCAACCAGAAGATAGAAGCGAAAGAGCCCGAAAAGAAGATACCTTCAACAGCAGCGAAG 443147
Query 74889 GCGACAAGGCGTTGCGCGAACGGTGCATCGGAA---GTCATCCAAGTCTGAGCCCATTCA 74945
|| || | |||| |||||| |||||| | | ||||| || ||||| |||
Sbjct 443148 GCAACCAAACGTTCAGCGAACAAAGCATCGTCATCGGCAATCCATCTCATGGCCCAGTCA 443207
Query 74946 GCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCG 75005
|| ||| ||||| || | || ||||| || | ||| | | | | ||||
Sbjct 443208 GCCTTTTCTTTGATACATGGAATGGTCTCGATGGCATTGAACAAGAATTCGGATTCTTTT 443267
Query 75006 GGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAAT 75055
||||| |||| | | ||||||| | |||||| || || || || ||
Sbjct 443268 GGATCTTTGATGTAAGTATCAATCAACAATGAGTAAGTTTCGGAGTGGAT 443317
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547215924757800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |