Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F001708105.1_202016-08-12] 11 sequences; 9,597,535 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq4 179 4e-40 seq3 159 4e-34 seq2 127 2e-24 seq1 120 3e-22 >seq4 Length=1577441 Score = 179 bits (198), Expect = 4e-40 Identities = 167/212 (79%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| | ||||||||||||||||| || ||||| |||||| Sbjct 1239933 ATGCAAATCTTCGTCAAGACCTTAACCGGCAAGACTATTACCCTCGAGGTGGAGTCATCA 1239874 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||| |||| |||||||||||||| || |||||||| || ||| Sbjct 1239873 GACACCATTGACAACGTCAAGTCTAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCAG 1239814 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| |||| ||||| ||||||||| | || || | | || || | |||||||| Sbjct 1239813 CAACGTTTAATCTTTGCAGGTAAGCAATTGGAAGACGGCAGAACTCTTTCTGACTATAAC 1239754 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTT 27617 | |||||||||||||||||||| |||| || Sbjct 1239753 ATTCAAAAGGAATCCACTCTTCACTTAGTTTT 1239722 Score = 178 bits (196), Expect = 1e-39 Identities = 161/203 (79%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| | ||||||||||||||||| || ||||| |||||| Sbjct 1240161 ATGCAAATCTTCGTCAAGACCTTAACCGGCAAGACTATTACCCTCGAGGTGGAGTCATCA 1240102 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||| |||| |||||||||||||| || |||||||| || ||| Sbjct 1240101 GACACCATTGACAACGTCAAGTCTAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCAG 1240042 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| |||| ||||| ||||||||| | || || | | || || | |||||||| Sbjct 1240041 CAACGTTTAATCTTTGCAGGTAAGCAATTGGAAGACGGCAGAACTCTTTCTGACTATAAC 1239982 Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608 | |||||||||||||||||||| Sbjct 1239981 ATTCAAAAGGAATCCACTCTTCA 1239959 Score = 178 bits (196), Expect = 1e-39 Identities = 161/203 (79%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| | ||||||||||||||||| || ||||| |||||| Sbjct 1240389 ATGCAAATCTTCGTCAAGACCTTAACCGGCAAGACTATTACCCTCGAGGTGGAGTCATCA 1240330 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||| |||| |||||||||||||| || |||||||| || ||| Sbjct 1240329 GACACCATTGACAACGTCAAGTCTAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCAG 1240270 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| |||| ||||| ||||||||| | || || | | || || | |||||||| Sbjct 1240269 CAACGTTTAATCTTTGCAGGTAAGCAATTGGAAGACGGCAGAACTCTTTCTGACTATAAC 1240210 Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608 | |||||||||||||||||||| Sbjct 1240209 ATTCAAAAGGAATCCACTCTTCA 1240187 Score = 165 bits (182), Expect = 9e-36 Identities = 159/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || ||||| || || || || || |||||||| ||||||||||| |||||| Sbjct 1240618 AATGCAGATTTTTGTGAAAACCCTAACAGGTAAGACTATCACTCTTGAGGTGGAGTCATC 1240559 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||||| || | ||| |||| |||||||||||||| || |||||||| || || Sbjct 1240558 AGACACCATTGACAACGTCAAGTCTAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCA 1240499 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| ||| |||| ||||| ||||||||| | || || | | || || | |||||||| Sbjct 1240498 GCAACGTTTAATCTTTGCAGGTAAGCAATTGGAAGACGGCAGAACTCTTTCTGACTATAA 1240439 Query 27585 TGTCCAAAAGGAATCCACTCTTCA 27608 | |||||||||||||||||||| Sbjct 1240438 CATTCAAAAGGAATCCACTCTTCA 1240415 >seq3 Length=1828518 Score = 159 bits (176), Expect = 4e-34 Identities = 154/198 (78%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || ||||| |||||||| |||||||| || | ||||| ||||| Sbjct 868735 AATGCAAATTTTCGTAAAGACCCTTACCGGTAAGACTATCACCTTGGAGGTGGAGTCTTC 868794 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | |||| || | ||| | || |||||||||||||||||||||||||| ||||| Sbjct 868795 CGACACTATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCTCCTGACCA 868854 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||||| || ||||||||||||||| | ||||||| | | || | | ||||| || Sbjct 868855 ACAGCGTCTGATCTTTGCTGGTAAGCAATTGGAGGATGGTAGAACTTTGTCTGACTACAA 868914 Query 27585 TGTCCAAAAGGAATCCAC 27602 |||||||||| || || Sbjct 868915 CATCCAAAAGGAGTCTAC 868932 >seq2 Length=2687137 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || || |||||||| | ||||| ||||| ||||| | || || ||||| Sbjct 1170121 AATGCAGATTTTCGTCAAGACCTTAACCGGTAAGACCATTACCTTGGAAGTCGAGTCCTC 1170062 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | || | ||| | || ||||| |||||||| ||||||||||| ||||| Sbjct 1170061 CGACACCATCGACAACGTCAAGTCCAAGATTCAAGACAAGGAAGGAATTCCTCCTGACCA 1170002 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || ||| | |||||||||||||||||| | || || | | | || || | ||||| || Sbjct 1170001 ACAACGTTTGATTTTTGCTGGTAAGCAATTGGAAGACGGTAGAACTCTGTCCGACTACAA 1169942 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGT 27614 |||| ||||| || ||| | || || || Sbjct 1169941 CATCCAGAAGGAGTCTACTTTGCACCTGGT 1169912 >seq1 Length=3325186 Score = 120 bits (132), Expect = 3e-22 Identities = 667/1056 (63%), Gaps = 51/1056 (5%) Strand=Plus/Minus Query 80714 TCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCG 80773 ||||||| | ||||| | || ||||| || | || || || | | ||| |||| | Sbjct 2236388 TCATGAAAGCATCAGCTAAACCTTGAACACCAACAGCAATTGGTCTATTACGCATGTTGG 2236329 Query 80774 ATCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTG 80833 ||| | ||||| |||| ||||| |||| | ||||| | | ||||| ||| || | Sbjct 2236328 ATCTCCTAGCCTCTGGAACCGGGTAGTAGTTTCTGTCGATAATTCTGTTCAAGTTACGAG 2236269 Query 80834 TAACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAAT------TG-GT----TCCC 80882 | || ||| || | ||||| || || | ||||| | | || || || Sbjct 2236268 TGACCACCTTCGTGATGTCATGCAGCTTTTCAAAGTTGTACCAACAGTGAGTATCATCGG 2236209 Query 80883 CTTCA-CAAATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCAT 80941 |||| |||| || ||||| | || |||| || || || || ||||| | Sbjct 2236208 TTTCAACAAAGGCTGGAAGAGCAATAGAAGCCAAGTTACAGACAGCAGTTTCTTCTGGGG 2236149 Query 80942 CTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCT 81001 | | |||| || || || || | ||||| || ||||| ||||| ||| |||| Sbjct 2236148 AAGAATACTCAACAATCTCACAACAAAGGTTAGAGGATTTAATGACACCCAAGTTCTTCT 2236089 Query 81002 GGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCT 81061 |||| | || ||| ||||| ||||| || ||||| | || |||||||| || || Sbjct 2236088 GGTTGGTTTTCTTGTTACAAGCATCCTTATACAACATGAATGGAGTACCGGTTTCTGTCT 2236029 Query 81062 GTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTT 81121 ||| || ||||||||||| ||||| || | || |||| || |||| ||| Sbjct 2236028 GTGCCTCGAGGATGGCGTACCAAAGCTTTTGGGCTTTGAT--------GG--TTTGTCTT 2235979 Query 81122 CGGCCACATAC---TTGG-------CGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCA 81171 | | || | | || | |||| ||| || || | | |||| | || Sbjct 2235978 CCACGACCTTCCTTTTCGTATCTTTCGTACAGTTCTTCAAATTCATCGCCGTAGACGTCG 2235919 Query 81172 GTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCC 81231 | ||| | || ||| | || | | |||| ||| ||| | |||| | | || Sbjct 2235918 GCAAGGCCAGGAGCCTCACTTGGAGAGAACAGGGTCCATTCGC---CATTCTGTTCGACC 2235862 Query 81232 ---TTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCC 81288 |||||||| ||||||||||| || || | ||| || || | | | ||| Sbjct 2235861 CTTTTCATGAACAGATCAGGGATCCATAGAGCCGGGAATAGATCTCTGGCTCTGATTTCC 2235802 Query 81289 TCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCC 81348 || | || ||||| || | || | |||| | | |||||||||||||||||| ||| Sbjct 2235801 TCTTTTCCATGGTTCTTACGAATGTCAATAAAGGCGAAGATGTCCGCATGCCATGGTTCC 2235742 Query 81349 AGATACACGGCGATCGACCCCTTGCGACGG---CCACCCTGGTTGACGTAACGGGCAGTC 81405 | |||| || | | || ||| | ||||| || | || ||||| || || Sbjct 2235741 AAGTACAAAGCAAATGCACCAGGGCGCTTGTTACCACCTTGATCAACATAACGAGCGGTG 2235682 Query 81406 GCGTTAAATACACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATA 81465 ||| || || | || ||| || || ||||| | || |||||| ||||| | || Sbjct 2235681 TTGTTGAAAACTCTCACCATTGGAATAATACCGTTCGAAGTACCGTTAGTACCAGCAATG 2235622 Query 81466 CGCGACCCCTTGGCGCGCACCTTGCTGAT-TGAAAGACCGATGCCACCTGACCACTTT-- 81522 || || |||| || | || || || || ||| || ||||| | || ||| Sbjct 2235621 TAGGATCCTGTGGCACGAATATTATGAATGTGCAA-ACCAATTCCACCAG--CAGTTTTG 2235565 Query 81523 GAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATG 81582 ||||| |||||| |||| || |||||||| || || || || | |||| Sbjct 2235564 GAAATTAAAGCACATTCCTTCAAAGTATCATAAATACCTTCAATCGAGTCATCCCGCATG 2235505 Query 81583 TCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGG 81642 ||| |||||||| ||||| || ||| | || || || ||||| || || Sbjct 2235504 GCAACTAAGAAACATGACGACATTTGTGGGTGAGGGGTACCAGCGTTAAACAGAGTAGGA 2235445 Query 81643 GTCGCGTGAATGAAATAACGGTTTGAC--ATCAGGTCATAGGTTTCCTTGACGCGTGGAA 81700 | |||||| ||||||| | |||| || | || |||||||| | || | || || Sbjct 2235444 GAGGCGTGAGTGAAATACT--TCTGACTCATAAAGTTGTAGGTTTCAATAACCCTTGCAA 2235387 Query 81701 TATCGTCACCGTGAATACCGATAGCTACACGCATAA 81736 | || ||||| |||||||||||||| |||||||||| Sbjct 2235386 TGTCATCACCATGAATACCGATAGCGACACGCATAA 2235351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310321582320