Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F001708105.1_202016-08-12] 11 sequences; 9,597,535 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq4 131 1e-25 seq2 116 2e-21 seq3 96.9 2e-15 >seq4 Length=1577441 Score = 131 bits (144), Expect = 1e-25 Identities = 169/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | | || ||||| || |||||| ||||||||||||||||| || ||| Sbjct 1240391 CCACCTCTTAATCTCAGGACCAAGTGAAGAGTGGATTCCTTTTGAATGTTATAGTCAGAA 1240450 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| ||||||| | ||| ||||| ||||| |||||||| || || || || || Sbjct 1240451 AGAGTTCTGCCGTCTTCCAATTGCTTACCTGCAAAGATTAAACGTTGCTGATCAGGAGGA 1240510 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || |||||||| ||| || | || ||| | ||| |||||| |||||| Sbjct 1240511 ATACCTTCCTTGTC-CTGAATCTTAGACTTGACGTTGTCAATGGTGTCTGATGACTCCAC 1240569 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || | || || || ||||| |||| |||||||||||||||||||| || Sbjct 1240570 CTCAAGAGTGATAGTCTTACCTGTTAGGGTTTTCACAAAAATCTGCATTTT 1240620 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | | || ||||| || |||||| ||||||||||||||||| || ||| Sbjct 1239935 CCACCTCTTAATCTCAGGACCAAGTGAAGAGTGGATTCCTTTTGAATGTTATAGTCAGAA 1239994 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| ||||||| | ||| ||||| ||||| |||||||| || || || || || Sbjct 1239995 AGAGTTCTGCCGTCTTCCAATTGCTTACCTGCAAAGATTAAACGTTGCTGATCAGGAGGA 1240054 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || |||||||| ||| || | || ||| | ||| |||||| |||||| Sbjct 1240055 ATACCTTCCTTGTC-CTGAATCTTAGACTTGACGTTGTCAATGGTGTCTGATGACTCCAC 1240113 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||| || || || |||||||| || || || || || ||||| Sbjct 1240114 CTCGAGGGTAATAGTCTTGCCGGTTAAGGTCTTGACGAAGATTTGCAT 1240161 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | | || ||||| || |||||| ||||||||||||||||| || ||| Sbjct 1240163 CCACCTCTTAATCTCAGGACCAAGTGAAGAGTGGATTCCTTTTGAATGTTATAGTCAGAA 1240222 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| ||||||| | ||| ||||| ||||| |||||||| || || || || || Sbjct 1240223 AGAGTTCTGCCGTCTTCCAATTGCTTACCTGCAAAGATTAAACGTTGCTGATCAGGAGGA 1240282 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || |||||||| ||| || | || ||| | ||| |||||| |||||| Sbjct 1240283 ATACCTTCCTTGTC-CTGAATCTTAGACTTGACGTTGTCAATGGTGTCTGATGACTCCAC 1240341 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||| || || || |||||||| || || || || || ||||| Sbjct 1240342 CTCGAGGGTAATAGTCTTGCCGGTTAAGGTCTTGACGAAGATTTGCAT 1240389 Score = 111 bits (122), Expect = 1e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 34495 AACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCT 34554 || || || || |||||| ||||||||||||||||| || ||||| |||| ||||| Sbjct 1239722 AAAACTAAGTGAAGAGTGGATTCCTTTTGAATGTTATAGTCAGAAAGAGTTCTGCCGTCT 1239781 Query 34555 TCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCT 34614 || | ||| ||||| ||||| |||||||| || || || || || | || |||||||| Sbjct 1239782 TCCAATTGCTTACCTGCAAAGATTAAACGTTGCTGATCAGGAGGAATACCTTCCTTGTC- 1239840 Query 34615 GTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGT 34673 ||| || | || ||| | ||| |||||| |||||| || | ||| || || Sbjct 1239841 CTGAATCTTAGACTTGACGTTGTCAATGGTGTCTGATGACTCCACCTCGAGGGTAATAGT 1239900 Query 34674 TTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || |||||||| || || || || || ||||| Sbjct 1239901 CTTGCCGGTTAAGGTCTTGACGAAGATTTGCAT 1239933 >seq2 Length=2687137 Score = 116 bits (128), Expect = 2e-21 Identities = 145/196 (74%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574 |||||| || ||||| || || || || |||| ||||||| | ||| ||||| ||||| Sbjct 1169929 CTCCTTCTGGATGTTGTAGTCGGACAGAGTTCTACCGTCTTCCAATTGCTTACCAGCAAA 1169988 Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634 || ||||| |||||||| || || | ||| ||||||||| ||||| | || ||| Sbjct 1169989 AATCAAACGTTGTTGGTCAGGAGGAATTCCTTCCTTGTCTTGAATCTTG-GACTTGACGT 1170047 Query 34635 TAAA-ATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 | || ||||| | ||| ||||||| ||| || || ||||||||||| || || | Sbjct 1170048 TGTCGATGGTGTCGGAGGACTCGACTTCCAAGGTAATGGTCTTACCGGTTAAGGTCTTGA 1170107 Query 34694 CAAAAATCTGCATGTT 34709 | ||||||||||| || Sbjct 1170108 CGAAAATCTGCATTTT 1170123 >seq3 Length=1828518 Score = 96.9 bits (106), Expect = 2e-15 Identities = 141/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574 ||||||||| ||||| || || || | |||| | || || | ||| ||||| ||||| Sbjct 868927 CTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTACCATCCTCCAATTGCTTACCAGCAAA 868868 Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634 || | |||||||||||| || || | |||||||||||| ||| || | || ||| Sbjct 868867 GATCAGACGCTGTTGGTCAGGAGGAATTCCCTCCTTGTC-CTGAATCTTGGACTTGACGT 868809 Query 34635 T-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 | ||| ||||| |||||| |||| ||| || || |||||||| | || || | Sbjct 868808 TGTCAATAGTGTCGGAAGACTCCACCTCCAAGGTGATAGTCTTACCGGTAAGGGTCTTTA 868749 Query 34694 CAAAAATCTGCATGTTG 34710 | ||||| ||||| ||| Sbjct 868748 CGAAAATTTGCATTTTG 868732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314729557806563