Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F001708105.1_202016-08-12] 11 sequences; 9,597,535 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq4 140 3e-28 seq2 131 1e-25 seq3 122 8e-23 >seq4 Length=1577441 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| || || || ||| |||| |||||||| ||||| | || Sbjct 1240617 ATGCAGATTTTTGTGAAAACCCTAACAGGTAAGACTATCACTCTTGAGGTGGAGTCATCA 1240558 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || ||||| ||||| ||||| || || || ||||| Sbjct 1240557 GACACCATTGACAACGTCAAGTCTAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCAG 1240498 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || |||||||| | || || || |||||||||||| | || |||| || || ||| Sbjct 1240497 CAACGTTTAATCTTTGCAGGTAAGCAATTGGAAGACGGCAGAACTCTTTCTGACTATAAC 1240438 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||| || || | || ||||| || | || | ||||| || Sbjct 1240437 ATTCAAAAGGAATCCACTCTTCACTTGGTCCTGAGATTAAGAGGTGGTAT 1240388 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || | ||||||||| ||||||| || || ||||| | || Sbjct 1239933 ATGCAAATCTTCGTCAAGACCTTAACCGGCAAGACTATTACCCTCGAGGTGGAGTCATCA 1239874 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || ||||| ||||| ||||| || || || ||||| Sbjct 1239873 GACACCATTGACAACGTCAAGTCTAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCAG 1239814 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || |||||||| | || || || |||||||||||| | || |||| || || ||| Sbjct 1239813 CAACGTTTAATCTTTGCAGGTAAGCAATTGGAAGACGGCAGAACTCTTTCTGACTATAAC 1239754 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||||||||| || || | || || ||||| | ||| ||||||| Sbjct 1239753 ATTCAAAAGGAATCCACTCTTCACTTAGTTTTAAGATTGAGGGGTGG 1239707 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || | ||||||||| ||||||| || || ||||| | || Sbjct 1240161 ATGCAAATCTTCGTCAAGACCTTAACCGGCAAGACTATTACCCTCGAGGTGGAGTCATCA 1240102 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || ||||| ||||| ||||| || || || ||||| Sbjct 1240101 GACACCATTGACAACGTCAAGTCTAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCAG 1240042 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || |||||||| | || || || |||||||||||| | || |||| || || ||| Sbjct 1240041 CAACGTTTAATCTTTGCAGGTAAGCAATTGGAAGACGGCAGAACTCTTTCTGACTATAAC 1239982 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||| || || | || ||||| || | || | ||||| || Sbjct 1239981 ATTCAAAAGGAATCCACTCTTCACTTGGTCCTGAGATTAAGAGGTGGTAT 1239932 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || | ||||||||| ||||||| || || ||||| | || Sbjct 1240389 ATGCAAATCTTCGTCAAGACCTTAACCGGCAAGACTATTACCCTCGAGGTGGAGTCATCA 1240330 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || ||||| ||||| ||||| || || || ||||| Sbjct 1240329 GACACCATTGACAACGTCAAGTCTAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCAG 1240270 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || |||||||| | || || || |||||||||||| | || |||| || || ||| Sbjct 1240269 CAACGTTTAATCTTTGCAGGTAAGCAATTGGAAGACGGCAGAACTCTTTCTGACTATAAC 1240210 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||| || || | || ||||| || | || | ||||| || Sbjct 1240209 ATTCAAAAGGAATCCACTCTTCACTTGGTCCTGAGATTAAGAGGTGGTAT 1240160 >seq2 Length=2687137 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || | ||||| ||| | ||||| | ||||| || | ||| Sbjct 1170120 ATGCAGATTTTCGTCAAGACCTTAACCGGTAAGACCATTACCTTGGAAGTCGAGTCCTCC 1170061 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || ||||||||||| ||||| || || || || ||| Sbjct 1170060 GACACCATCGACAACGTCAAGTCCAAGATTCAAGACAAGGAAGGAATTCCTCCTGACCAA 1170001 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | || || || |||||||||||| || || | ||||| |||||| Sbjct 1170000 CAACGTTTGATTTTTGCTGGTAAGCAATTGGAAGACGGTAGAACTCTGTCCGACTACAAC 1169941 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| || || || ||||| || | ||| | ||||| || Sbjct 1169940 ATCCAGAAGGAGTCTACTTTGCACCTGGTTCTGAGATTGAGAGGTGGTAT 1169891 >seq3 Length=1828518 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || ||||| || || ||||| ||| |||| || | || ||||| | ||| Sbjct 868736 ATGCAAATTTTCGTAAAGACCCTTACCGGTAAGACTATCACCTTGGAGGTGGAGTCTTCC 868795 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || ||||| ||||| || || || || || || ||| Sbjct 868796 GACACTATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCTCCTGACCAA 868855 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || || || |||||||| || || || | || || |||||| Sbjct 868856 CAGCGTCTGATCTTTGCTGGTAAGCAATTGGAGGATGGTAGAACTTTGTCTGACTACAAC 868915 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || ||||||||||| ||||| || ||||| | | ||| | ||||| Sbjct 868916 ATCCAAAAGGAGTCTACCTTGCACTTGGTCCTTAGATTGAGAGGTGG 868962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434918340198720