Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F001708105.1_202016-08-12] 11 sequences; 9,597,535 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq4 179 9e-40 seq3 147 5e-30 seq2 147 5e-30 >seq4 Length=1577441 Score = 179 bits (198), Expect = 9e-40 Identities = 171/219 (78%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| ||||| | |||||||||||| || ||||| |||||||| || | ||| || || || Sbjct 1240402 TCTCAGGACCAAGTGAAGAGTGGATTCCTTTTGAATGTTATAGTCAGAAAGAGTTCTGCC 1240461 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||||| ||||| ||||| ||||| | ||||| || |||||||||| |||||||| Sbjct 1240462 GTCTTCCAATTGCTTACCTGCAAAGATTAAACGTTGCTGATCAGGAGGAATACCTTCCTT 1240521 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 |||||| ||||| || ||||| || |||||||| || || ||||| |||||||| Sbjct 1240522 GTCCTGAATCTTAGACTTGACGTTGTCAATGGTGTCTGATGACTCCACCTCAAGAGTGAT 1240581 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| || || || || || ||||| | ||||||||| Sbjct 1240582 AGTCTTACCTGTTAGGGTTTTCACAAAAATCTGCATTTT 1240620 Score = 159 bits (176), Expect = 8e-34 Identities = 165/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| ||||| | |||||||||||| || ||||| |||||||| || | ||| || || || Sbjct 1239946 TCTCAGGACCAAGTGAAGAGTGGATTCCTTTTGAATGTTATAGTCAGAAAGAGTTCTGCC 1240005 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||||| ||||| ||||| ||||| | ||||| || |||||||||| |||||||| Sbjct 1240006 GTCTTCCAATTGCTTACCTGCAAAGATTAAACGTTGCTGATCAGGAGGAATACCTTCCTT 1240065 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 |||||| ||||| || ||||| || |||||||| || || |||||||| || || Sbjct 1240066 GTCCTGAATCTTAGACTTGACGTTGTCAATGGTGTCTGATGACTCCACCTCGAGGGTAAT 1240125 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || | ||||| || || | ||||| Sbjct 1240126 AGTCTTGCCGGTTAAGGTCTTGACGAAGATTTGCAT 1240161 Score = 159 bits (176), Expect = 8e-34 Identities = 165/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| ||||| | |||||||||||| || ||||| |||||||| || | ||| || || || Sbjct 1240174 TCTCAGGACCAAGTGAAGAGTGGATTCCTTTTGAATGTTATAGTCAGAAAGAGTTCTGCC 1240233 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||||| ||||| ||||| ||||| | ||||| || |||||||||| |||||||| Sbjct 1240234 GTCTTCCAATTGCTTACCTGCAAAGATTAAACGTTGCTGATCAGGAGGAATACCTTCCTT 1240293 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 |||||| ||||| || ||||| || |||||||| || || |||||||| || || Sbjct 1240294 GTCCTGAATCTTAGACTTGACGTTGTCAATGGTGTCTGATGACTCCACCTCGAGGGTAAT 1240353 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || | ||||| || || | ||||| Sbjct 1240354 AGTCTTGCCGGTTAAGGTCTTGACGAAGATTTGCAT 1240389 Score = 156 bits (172), Expect = 1e-32 Identities = 164/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||||| || | |||||||||||| || ||||| |||||||| || | ||| || || || Sbjct 1239718 TCTTAAAACTAAGTGAAGAGTGGATTCCTTTTGAATGTTATAGTCAGAAAGAGTTCTGCC 1239777 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||||| ||||| ||||| ||||| | ||||| || |||||||||| |||||||| Sbjct 1239778 GTCTTCCAATTGCTTACCTGCAAAGATTAAACGTTGCTGATCAGGAGGAATACCTTCCTT 1239837 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 |||||| ||||| || ||||| || |||||||| || || |||||||| || || Sbjct 1239838 GTCCTGAATCTTAGACTTGACGTTGTCAATGGTGTCTGATGACTCCACCTCGAGGGTAAT 1239897 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || | ||||| || || | ||||| Sbjct 1239898 AGTCTTGCCGGTTAAGGTCTTGACGAAGATTTGCAT 1239933 >seq3 Length=1828518 Score = 147 bits (162), Expect = 5e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| ||||| | ||| | || ||||| ||||||||||| || || | | || || || Sbjct 868951 TCTAAGGACCAAGTGCAAGGTAGACTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTACC 868892 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||| |||| ||||| || || ||||| || || |||||||||||||||| ||| ||||| Sbjct 868891 ATCCTCCAATTGCTTACCAGCAAAGATCAGACGCTGTTGGTCAGGAGGAATTCCCTCCTT 868832 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 |||||| ||||| || ||||| || || ||||| || || ||||| | ||||| Sbjct 868831 GTCCTGAATCTTGGACTTGACGTTGTCAATAGTGTCGGAAGACTCCACCTCCAAGGTGAT 868772 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| || || || |||||||| || | |||||||| Sbjct 868771 AGTCTTACCGGTAAGGGTCTTTACGAAAATTTGCATTTT 868733 >seq2 Length=2687137 Score = 147 bits (162), Expect = 5e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| || || ||||| | ||| ||||| || |||||||| || || | || || || || Sbjct 1169905 TCTCAGAACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCTACC 1169964 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||||| ||||| || || || || | ||||||||||||||||||| ||||||||| Sbjct 1169965 GTCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGTTGGTCAGGAGGAATTCCTTCCTT 1170024 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| || ||||| || ||||| ||||||||||| ||| || || || | || || Sbjct 1170025 GTCTTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAGGACTCGACTTCCAAGGTAAT 1170084 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| || || | ||||| || || | ||||||||| Sbjct 1170085 GGTCTTACCGGTTAAGGTCTTGACGAAAATCTGCATTTT 1170123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151836632015