Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F001708105.1_202016-08-12] 11 sequences; 9,597,535 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq2 147 5e-30 seq4 138 3e-27 seq1 84.2 5e-11 >seq2 Length=2687137 Score = 147 bits (162), Expect = 5e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 |||||| || ||||| | ||| || || || |||| ||||| |||| || |||||| || Sbjct 1169905 TCTCAGAACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCTACC 1169964 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||| | ||||| ||||| || || | ||||||||||| || ||||| |||||||| Sbjct 1169965 GTCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGTTGGTCAGGAGGAATTCCTTCCTT 1170024 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||| ||||| ||| || ||||||||||| |||| || || || || || || Sbjct 1170025 GTCTTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAGGACTCGACTTCCAAGGTAAT 1170084 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| || || || || || | ||| | |||||||| Sbjct 1170085 GGTCTTACCGGTTAAGGTCTTGACGAAAATCTGCATTTT 1170123 >seq4 Length=1577441 Score = 138 bits (152), Expect = 3e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||||||| | ||| ||||||||||| ||||| | || || || | | |||||| || Sbjct 1239946 TCTCAGGACCAAGTGAAGAGTGGATTCCTTTTGAATGTTATAGTCAGAAAGAGTTCTGCC 1240005 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||| | ||||| || || ||||| | ||||| || || || |||||||||||||| Sbjct 1240006 GTCTTCCAATTGCTTACCTGCAAAGATTAAACGTTGCTGATCAGGAGGAATACCTTCCTT 1240065 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||| || ||||| ||| || || ||||||||||| | ||||| || | || || Sbjct 1240066 GTCCTGAATCTTAGACTTGACGTTGTCAATGGTGTCTGATGACTCCACCTCGAGGGTAAT 1240125 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||| || || || || | ||| | |||||| Sbjct 1240126 AGTCTTGCCGGTTAAGGTCTTGACGAAGATTTGCAT 1240161 Score = 138 bits (152), Expect = 3e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||||||| | ||| ||||||||||| ||||| | || || || | | |||||| || Sbjct 1240174 TCTCAGGACCAAGTGAAGAGTGGATTCCTTTTGAATGTTATAGTCAGAAAGAGTTCTGCC 1240233 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||| | ||||| || || ||||| | ||||| || || || |||||||||||||| Sbjct 1240234 GTCTTCCAATTGCTTACCTGCAAAGATTAAACGTTGCTGATCAGGAGGAATACCTTCCTT 1240293 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||| || ||||| ||| || || ||||||||||| | ||||| || | || || Sbjct 1240294 GTCCTGAATCTTAGACTTGACGTTGTCAATGGTGTCTGATGACTCCACCTCGAGGGTAAT 1240353 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||| || || || || | ||| | |||||| Sbjct 1240354 AGTCTTGCCGGTTAAGGTCTTGACGAAGATTTGCAT 1240389 Score = 134 bits (148), Expect = 3e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||||||| | ||| ||||||||||| ||||| | || || || | | |||||| || Sbjct 1240402 TCTCAGGACCAAGTGAAGAGTGGATTCCTTTTGAATGTTATAGTCAGAAAGAGTTCTGCC 1240461 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||| | ||||| || || ||||| | ||||| || || || |||||||||||||| Sbjct 1240462 GTCTTCCAATTGCTTACCTGCAAAGATTAAACGTTGCTGATCAGGAGGAATACCTTCCTT 1240521 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||| || ||||| ||| || || ||||||||||| | ||||| || | ||||| Sbjct 1240522 GTCCTGAATCTTAGACTTGACGTTGTCAATGGTGTCTGATGACTCCACCTCAAGAGTGAT 1240581 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| || || | ||||| | || | |||||||| Sbjct 1240582 AGTCTTACCTGTTAGGGTTTTCACAAAAATCTGCATTTT 1240620 Score = 125 bits (138), Expect = 2e-23 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||| ||||||||||| ||||| | || || || | | |||||| || ||||| | || Sbjct 1239730 GTGAAGAGTGGATTCCTTTTGAATGTTATAGTCAGAAAGAGTTCTGCCGTCTTCCAATTG 1239789 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| || || ||||| | ||||| || || || ||||||||||||||||| || ||||| Sbjct 1239790 CTTACCTGCAAAGATTAAACGTTGCTGATCAGGAGGAATACCTTCCTTGTCCTGAATCTT 1239849 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||| || || ||||||||||| | ||||| || | || || |||||||| || Sbjct 1239850 AGACTTGACGTTGTCAATGGTGTCTGATGACTCCACCTCGAGGGTAATAGTCTTGCCGGT 1239909 Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713 || || || | ||| | |||||| Sbjct 1239910 TAAGGTCTTGACGAAGATTTGCAT 1239933 >seq1 Length=3325186 Score = 84.2 bits (92), Expect = 5e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||||||||||||||| || || || || || || ||||||||||| |||||||| Sbjct 1116514 GAAAATTTGACCATCAGTAATGGAAATGACGTTGGTTGGAATATAAGCAGAGACATCACC 1116573 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATT 4580 |||| || || | || || || || || | || |||||||| || || Sbjct 1116574 ACCTTGGGTCTCAATGACTGGCAAAGCGGTCAAAGAACCACCACCCAATTT 1116624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192531031927634