Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F001708105.1_202016-08-12]
11 sequences; 9,597,535 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq3 107 2e-18
seq2 93.3 4e-14
>seq3
Length=1828518
Score = 107 bits (118), Expect = 2e-18
Identities = 143/196 (73%), Gaps = 2/196 (1%)
Strand=Plus/Minus
Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730
|||||| || ||||| ||||| || | || | | || || | ||||| || || ||
Sbjct 868927 CTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTACCATCCTCCAATTGCTTACCAGCAAA 868868
Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790
||||| ||||||||||| | |||| | |||||||||| ||| | || | | |||
Sbjct 868867 GATCAGACGCTGTTGGTCAGGAGGAATTCCCTCCTTGTCC-TGAATCTTGGACTTGACGT 868809
Query 41791 CGACAC-AGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849
| || ||||||| ||||||||||||| || || || ||||| || || |||||||
Sbjct 868808 TGTCAATAGTGTCGGAAGACTCCACCTCCAAGGTGATAGTCTTACCGGTAAGGGTCTTTA 868749
Query 41850 CGAAAATCTGCATGTT 41865
||||||| ||||| ||
Sbjct 868748 CGAAAATTTGCATTTT 868733
>seq2
Length=2687137
Score = 93.3 bits (102), Expect = 4e-14
Identities = 150/213 (70%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713
||||| |||| || ||||||||| ||||| |||||||| || || | |||| ||
Sbjct 1169912 ACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCTACCGTCTTCC 1169971
Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773
| ||||| || || || |||| || |||||||| | |||| | |||||||| ||
Sbjct 1169972 AATTGCTTACCAGCAAAAATCAAACGTTGTTGGTCAGGAGGAATTCCTTCCTTGTCT-TG 1170030
Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832
| | || | | ||| | | | |||||| ||||| || |||| || || || ||
Sbjct 1170031 AATCTTGGACTTGACGTTGTCGATGGTGTCGGAGGACTCGACTTCCAAGGTAATGGTCTT 1170090
Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
||| || | ||||| |||||||||||||| ||
Sbjct 1170091 ACCGGTTAAGGTCTTGACGAAAATCTGCATTTT 1170123
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462303936433200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |