Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900007755.1_202016-02-08] 177 sequences; 9,361,826 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq24 251 7e-62 >seq24 Length=433630 Score = 251 bits (278), Expect = 7e-62 Identities = 571/853 (67%), Gaps = 7/853 (1%) Strand=Plus/Plus Query 13581 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13640 ||||| || ||| |||||| ||||| |||||||| |||||||| ||| || || || Sbjct 106008 TTTTGGTAATCAGAAACTCTCTTTTCGAAGAAGTTGGTTTTACCGGCCAAAGAAATGTTC 106067 Query 13641 TCCATAAAATCAAATGGATTTATTGAC-ATAAACACTTTATCACAACCTAGTTCTAATAG 13699 ||||| || ||||||||| || ||||| | |||| || | || || ||| || Sbjct 106068 TCCATGAAGTCAAATGGA-TTGTTGACGTTGTACACCTTTTTGTTGCCCAGAGCTACCAG 106126 Query 13700 TAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 13759 || ||| ||||||| ||||||| ||| || |||| || || ||||| || | || Sbjct 106127 TAGTCTGTCAGCAACGAACTCAACATACTGGCACATCAAGCTGCAGTTCATCCCCAGTAA 106186 Query 13760 TTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAAT 13819 ||||||| | || || | |||||| || ||||||||| | ||||| Sbjct 106187 GGAGACAGGAAGAGCGTCTGTGAAGTACCTTTTTTCGATCTCGACAGCCTCTGTGATAAT 106246 Query 13820 AATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAA 13879 || || || || | | | || |||| ||| ||| | || || ||||| Sbjct 106247 CTTTTCAACGATTTCCTCACTGGCTCTATTGTTTAAATGAGAAAATAGCAAGCAAGCAAA 106306 Query 13880 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCAT 13939 ||| || | ||||| ||||| | |||||| || || || || || || |||||||| Sbjct 106307 GTCAGTGTGTAATCCCTCGTCTCTGCAAATAAGCTCATTGGAGAAGGTCAAACCTGGCAT 106366 Query 13940 CAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTC 13999 | |||| || || ||||| || || | |||||| || || |||||||| || ||||| Sbjct 106367 GAGACCTCTCTTCTTCAACCAGAAGATAGAAGCAAAAGATCCTGAAAAGAAGATACCCTC 106426 Query 14000 AACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTT 14059 ||| ||||| || || | || ||||| | ||| |||| | | | || |||||| | Sbjct 106427 AACAGCAGCGAAGGCAACCAAACGTTCAGCGAACAATGCATCGTCATCAGAAATCCATCT 106486 Query 14060 TCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATA 14119 | ||||| |||| |||| ||| ||| | || || || || ||||| || | | Sbjct 106487 CATGGCCCAGTCAGCCTTTTCTTTGATACATGGAATGGTCTCGATGGCATTGAACAGGAA 106546 Query 14120 TTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTG 14179 ||| |||||| | | | ||||| |||||||| || ||| || | || ||||| Sbjct 106547 TTCAGACTCTTTTGGATCTTTGATGTAAGTATCAATCAGCAAGGAGTAAGTCTCGGAGTG 106606 Query 14180 TATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTC 14239 ||||| ||||| ||||| ||||| ||||||||| | ||||| | ||| || || Sbjct 106607 AATGTTCTCCATCATGATCTGGAAACCGTAAAAGCATTTTGCTTCGGGAAGTTGAACCTC 106666 Query 14240 CG-AGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATG 14298 | | | |||| |||| |||| |||||||| || ||||| ||| || ||||| || | Sbjct 106667 AGCACTGAAAT-TTTCCACCAAGTTTTCATTGACAATACCGTCAGAGGCAGCAAAGAAGG 106725 Query 14299 CCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGA---GTTTTTTCCAATCGGATA 14355 | | | | || ||| ||| || | || ||| | | || ||||| || | Sbjct 106726 CAAGGACTCTCGAGATGAAGAATTTTTCATTATCGTTCATACGATTATTCCAGTCATGCA 106785 Query 14356 AATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACA 14415 |||||||| || |||| ||| ||| | |||||||| ||| | || | || |||| Sbjct 106786 AATCCTTACCCAGGTCTATTTCCTCAGCAGTCCAAAAGGAAGCTTCGGCCTGCTTGTACA 106845 Query 14416 TTACCCATATTTC 14428 || ||| || || Sbjct 106846 TTTGCCAGATATC 106858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479726938601800