Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F900007755.1_202016-02-08]
177 sequences; 9,361,826 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq21 118 1e-21
seq15 107 2e-18
seq3 95.1 1e-14
>seq21
Length=136665
Score = 118 bits (130), Expect = 1e-21
Identities = 150/204 (74%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197
|| || || ||||||||||| ||||| ||||| | ||| || || |||| |||
Sbjct 136351 TGAAGAGTGGATTCCTTTTGAATATTGTAATCAGAAAGAGTTCTACCGTCTTCCAGTTGC 136410
Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257
|| || ||| | ||||| ||||||||||| || ||||| ||||| || |||||||| ||
Sbjct 136411 TTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGAATACCTTCCTTGTCTTGAATCTTA 136470
Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316
||||| || | || | || || || ||||| || || ||||| | || || || ||
Sbjct 136471 GATTTGA-CGTTATCAATAGTATCTGATGACTCTACCTCAAGAGTGATAGTCTTACCAGT 136529
Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340
|||||| || || ||||| |||||
Sbjct 136530 TAGAGTCTTGACGAAAATCTGCAT 136553
>seq15
Length=629035
Score = 107 bits (118), Expect = 2e-18
Identities = 308/462 (67%), Gaps = 14/462 (3%)
Strand=Plus/Plus
Query 123303 GCGATCTATCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAA-AACGCAA 123361
|| || |||||||| || ||||||| || |||| ||||| || || || | || | |
Sbjct 588058 GCCATTTATCTAGAGCCATGGCACGAAGAAGTGTTTGATTTGTTGAACTTGAGAAAGAAT 588117
Query 123362 CATGGGGGCGGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTT 123421
|| || ||| || | | |||| | ||||| || |||||||| ||| | ||||| |
Sbjct 588118 CACGGCAA-GGAGGAGATCAGAGCCAGAGATTTATTCTACGCTTTGTGGATTCCCGACCT 588176
Query 123422 GTTTATGCGACGCGT--AAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGT 123479
|||||| | || |||||| | | | |||| ||| | ||| | ||
Sbjct 588177 TTTTATGGAAAAAGTCGAAAAGA--ATGAGGACTGGTGCCTCTTCAACCCCTTGCA-TGC 588233
Query 123480 CCC-GGCTTGAGCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCG 123538
| || |||| || ||||||||| | || || || | || || | ||||||
Sbjct 588234 CAAAGGTTTGAATGATGTTTACGGCGAACAATTCAACCTCCTTTATGCTGAGTACGAGAA 588293
Query 123539 CGAAGGCAAAC-AGGTTAGTCAGGTTCCGGCACGTGATTTGTTCAAATTTATTATCGAAA 123597
||||| || | ||||| || |||| || | | || | || |||| | ||
Sbjct 588294 -GAAGGGAATGTATGTTAGAAAGATTCCTGCTCAACAATTATGGAATGCTATTGTAGACG 588352
Query 123598 CACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCA 123657
| ||| | || || || || |||| |||| | || |||||| | |||||||||||| | |
Sbjct 588353 CTCAAATTGAGACAGGGACTCCGTTCATGTTGTATAAAGACTCTTGCAACAGGAAATCTA 588412
Query 123658 ATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATA-- 123715
| || ||||||||||| |||||| ||||| |||| | |||| |||||| | || ||
Sbjct 588413 ACCAAAGCAACTTGGGTACAATACAATGTTCTAATTTGTGCTGTGAAATTGTGGAGTACT 588472
Query 123716 CAGCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGAT 123757
| | | | || ||| | || |||||||||||||| || ||
Sbjct 588473 CTTCAAGG--GACCAAATCGCAGTGTGTAATTTGGCCTCCAT 588512
Score = 104 bits (114), Expect = 2e-17
Identities = 152/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185
|||| || || |||| || || ||||| ||||| || || || | ||| ||
Sbjct 86111 CTCAGAACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGAGTTCTACCG 86052
Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245
|| |||| ||| || || || | ||||| ||||| ||||| || ||||| ||||| ||
Sbjct 86051 TCTTCCAGTTGCTTACCAGCAAAAATCAAACGTTGTTGGTCAGGAGGAATTCCTTCCTTG 85992
Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305
|||||||| || |||| || | ||||||||| ||||||||||| | ||||
Sbjct 85991 TCTTGAATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCGACTTCCAAGGTAATA 85932
Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || ||||||| || || || ||||| |||||
Sbjct 85931 GTCTTACCGGTTAAGGTCTTGACGAAAATCTGCAT 85897
>seq3
Length=641798
Score = 95.1 bits (104), Expect = 1e-14
Identities = 145/204 (71%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197
|||| || || ||||||||||| || || || | ||| || ||| ||||||||
Sbjct 231919 TGCAAAGTAGACTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTACCATCCTCCAATTGC 231860
Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257
|| || || | |||| || || ||||| || ||||| || || || || ||||| ||
Sbjct 231859 TTACCAGCAAAGATCAGACGCTGTTGGTCAGGAGGAATTCCCTCCTTGTCCTGAATCTTG 231800
Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316
|||| || | || | |||||||||||||| || || | || | || || |||||
Sbjct 231799 GACTTGA-CGTTGTCAATAGTGTCGGAAGACTCCACCTCCAAGGTGATAGTCTTACCGGT 231741
Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340
|| || ||||| |||||||||||
Sbjct 231740 AAGGGTCTTTACGAAAATTTGCAT 231717
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 452002199942920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |