Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900007765.1_202016-02-08] 125 sequences; 9,357,276 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq23 235 6e-57 >seq23 Length=328616 Score = 235 bits (260), Expect = 6e-57 Identities = 580/865 (67%), Gaps = 21/865 (2%) Strand=Plus/Plus Query 15912 TTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTT 15971 ||||||||||| ||| | |||||||||||||| ||||| || | ||||| || || | Sbjct 8461 TTTGGTAATCAGAAACTCTCTTTTCGAAGAAGTTGGTTTTACCGGCCAAAGAAATGTTCT 8520 Query 15972 CCATAAAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAGTTCCGTAACTA 16031 |||| || ||||| ||||| | | | | ||| || ||||| | | || Sbjct 8521 CCATGAAGTCAAATGGATTGTTGACGTTGTACACCTTTTTGTTGCCCAGAGCTACCAGTA 8580 Query 16032 ATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTA-TAAGT 16090 ||| || || || || || | ||| || ||||| ||| ||| || || || | |||| Sbjct 8581 GTCTGTCAGCAACGAACTCAACATACTGGCACATCAAGCTGCAGTTCATCCCCAGTAAGG 8640 Query 16091 CGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATA 16150 | || |||||||| | ||| || | || ||| ||| | || || ||| | || || Sbjct 8641 AG-ACAGGAAGAGCGTCTGTGAAGTACCTTTTTTCGATCTCGACAGCCTCTGTGATAATC 8699 Query 16151 TCGGTGGCTCGTGTTTCAGACGG--TGTATGGTTTAGGTGTTTAAACATTAGACACGCGA 16208 | | || || | || | | ||| ||||| || ||| | | || || | Sbjct 8700 TT--TTCAACGATTTCCTCACTGGCTCTATTGTTTAAATGAGAAAATAGCAAGCAAGCAA 8757 Query 16209 AGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCA 16268 |||| |||| ||| |||||||||| ||||| || ||||| || || || ||||||| Sbjct 8758 AGTCAGTGTGTAATCCCTCGTCTCTGCAAATAAGCTCATTGGAGAAGGTCAAACCTGGCA 8817 Query 16269 TTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCT 16328 | |||| ||||| |||||||| || | |||||| || || |||||||| ||||||| Sbjct 8818 TGAGACCTCTCTTCTTCAACCAGAAGATAGAAGCAAAAGATCCTGAAAAGAAGATACCCT 8877 Query 16329 CAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATT 16388 |||||| || || || | || ||||| ||| || ||||| | || | ||||||| Sbjct 8878 CAACAGCAGCGAAGGCAACCAAACGTTCAGCGAACAATGCATCGTCATCAGAAATCCATC 8937 Query 16389 TCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACA--A 16446 || |||| || || |||| ||| ||||| || || || ||||| || |||| | Sbjct 8938 TCATGGCCCAGTCAGCCTTTTCTTTGATACATGGAATGGTCTCGATGGCATTGAACAGGA 8997 Query 16447 TTTC--TCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCT 16504 ||| || ||| || ||| | || || ||||||||||| || ||| | || Sbjct 8998 ATTCAGACTCTTT--TG--GATCTTTGATGTAAGTATCAATCAGCAAGGAGTAAGTCTCG 9053 Query 16505 GAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGT 16564 ||||| |||||||| || ||||| || || || |||||| || || | | ||| Sbjct 9054 GAGTGAATGTTCTCCATCATGATCTGGAAACCGTAAAAGCATTTTGCTTCGGGAAGTTGA 9113 Query 16565 ACTTC--CACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAA 16622 || || ||| | |||| |||| ||| ||| ||||| || ||||||||| ||||||| Sbjct 9114 ACCTCAGCAC-TGAAAT-TTTCCACCAAGTTTTCATTGACAATACCGTCAGAGGCAGCAA 9171 Query 16623 AAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCA--GAT-GTAAGAATATGCCAAT 16679 | || || | | | ||||| ||||||| | | | | || || ||| ||| | Sbjct 9172 AGAAGGCAAGGACTCTCGAGATGAAGAATTTTTCATTATCGTTCATACGATTATTCCAGT 9231 Query 16680 CTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTT 16739 | | ||||| || | || | ||| || | ||||||||| ||| | |||| | Sbjct 9232 CATGCAAATCCTTACCCAGGTCTATTTCCTCAGCAGTCCAAAAGGAAGCTTCGGCCTGCT 9291 Query 16740 TATACATTTTCCAAATATCATTGTA 16764 | ||||||| ||| ||||| | ||| Sbjct 9292 TGTACATTTGCCAGATATCGTGGTA 9316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511413600915000