Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900007765.1_202016-02-08] 125 sequences; 9,357,276 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq3 105 6e-18 seq32 93.3 4e-14 seq8 93.3 4e-14 seq17 87.8 2e-12 >seq3 Length=751085 Score = 105 bits (116), Expect = 6e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 118521 AATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGC 118580 ||||| | |||||||| | |||||||| ||||| |||||||| || || ||| | Sbjct 231934 AATCTAAGGACCAAGTGCAAAGTAGACTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTA 231875 Query 118581 GTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCC 118640 |||||| | || || ||||| |||| |||||||| || || ||||| || |||||| Sbjct 231874 CCATCCTCCAATTGCTTACCAGCAAAGATCAGACGCTGTTGGTCAGGAGGAATTCCCTCC 231815 Query 118641 TTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTC 118700 ||||| ||| || || || | || | ||||| | ||| ||||| | ||| Sbjct 231814 TTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTGTCGGAAGACTCCACCTCCAAGGTG 231755 Query 118701 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || || ||||| || || ||||| ||||| ||||| Sbjct 231754 ATAGTCTTACCGGTAAGGGTCTTTACGAAAATTTGCAT 231717 >seq32 Length=98125 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || | |||||| | |||||||||| || || || ||||| ||||||||||| Sbjct 80 TACCACCCCTTAATCTTAGAACCAAGTGGAGGGTGGATTCCTTTTGGATGTTGTAATCAG 139 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||| | || || || || || ||||| | || | ||| ||||| || |||| Sbjct 140 AAAGAGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAAATTAAACGTTGCTGGTCAGGAG 199 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || ||||| ||| ||| || ||| || | || | ||||| | ||| | Sbjct 200 GAATACCTTCCTTATCTTGAATCTTGGATTTGACATTATCAATAGTGTCTGATGACTCCA 259 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| | || | || || || || || ||||| |||||||||||||| Sbjct 260 CCTCAAGAGTGATAGTCTTACCTGTTAGGGTTTTAACAAAAATCTGCAT 308 >seq8 Length=252130 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || | ||||||| |||| ||| | |||||||| || || |||||||| || Sbjct 166012 TACCACCTCTCAATCTCAGAACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCAG 166071 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || ||| | || || || || || ||||| | || | ||| || || || |||| Sbjct 166072 ACAGAGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAAATCAAACGTTGTTGGTCAGGAG 166131 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || ||||||||| ||| || || || | |||| |||||| | | ||||| Sbjct 166132 GAATTCCTTCCTTGTCTTGAATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCGA 166191 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | ||| | || || ||||| | || || || ||||||||||| Sbjct 166192 CTTCCAAGGTAATAGTCTTACCGGTTAAGGTCTTGACGAAAATCTGCAT 166240 >seq17 Length=213745 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 118523 TCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT 118582 ||| || |||||||| | || || || |||||||| |||||||| | ||| | Sbjct 331 TCTTAATACCAAGTGAAGAGTGGATTCCTTTTGAATATTGTAATCAGAAAGAGTTCTACC 272 Query 118583 ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTT 118642 || || || || || |||||| |||| | ||| ||||| || ||||| || || ||||| Sbjct 271 GTCTTCCAGTTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGAATACCTTCCTT 212 Query 118643 GTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCAC 118702 |||| ||| || ||| || | || | || || | ||| ||||| | || | Sbjct 211 GTCTTGAATCTTAGATTTGACGTTATCAATAGTATCTGATGACTCTACCTCAAGAGTGAT 152 Query 118703 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || ||||| || || ||||||||||| Sbjct 151 AGTCTTACCAGTTAGAGTCTTGACGAAAATCTGCAT 116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433829739086500