Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900009515.1_202016-02-08] 227 sequences; 9,374,785 total letters Query= NC_000924.1 Length=61670 Score E Sequences producing significant alignments: (Bits) Value seq95 679 0.0 >seq95 Length=1024 Score = 679 bits (752), Expect = 0.0 Identities = 400/416 (96%), Gaps = 0/416 (0%) Strand=Plus/Plus Query 4828 TTGCTTTCTCTGCCTTTTCACGCAGTGCCTGATAATTAATTTCGCTCACTTCGAACCTCT 4887 |||| | ||||||| |||||||||||||||| | ||||||||||||||||||||||||| Sbjct 609 TTGCCTGCTCTGCCGCTTCACGCAGTGCCTGAGAGTTAATTTCGCTCACTTCGAACCTCT 668 Query 4888 CTGTTTACTGATAAGCTCCAGATCCTCCTGGCAACTTGCACAAGTCCGACAACCCTGAAC 4947 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 669 CTGTTTACTGATAAGTTCCAGATCCTCCTGGCAACTTGCACAAGTCCGACAACCCTGAAC 728 Query 4948 GGCCAGGCGTCTTCGCTCATCTATGGGATCGCCACACTCACAACAATGAGTGGCAGATAT 5007 | ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 729 GACCAGGCGTCTTCGTTCATCTATCGGATCGCCACACTCACAACAATGAGTGGCAGATAT 788 Query 5008 AGCCTGGTGGTTCAGGCGGCGCATTTTTATTGCTGTGTTGCGCTGTAATTCTTCAATTTC 5067 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 789 AGCCTGGTGGTTCAGGCGGCGCATTTTTATTGCTGTGTTGCGCTGTAATTCTTCTATTTC 848 Query 5068 TGATGCTGAATCAATGAGGTCTGCCATCTTTCATTAATCCCTGAATTGTTGGTTAATACG 5127 ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| Sbjct 849 TGATGCTGAATCAATGATGTCTGCCATCTTTCATTAATCCCTGAACTGTTGGTTAATACG 908 Query 5128 CTTGAGGGTGAATGCGAATAATAAAAAAGGAGCCTGTAGCTCCCTGATGATTTTGCTTTT 5187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 909 CTTGAGGGTGAATGCGAATAATAAAAAAGGAGCCTGTAGCTCCCTGATGATTTTGCTTTT 968 Query 5188 CATGTTCACCGTTCCTTAAAGACGCCGTTTAACATGCCGATCGCCAGACTTAAATG 5243 |||||||| |||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 969 CATGTTCATCGTTCCTTAAAGACGCCGTTTAACATGCCGATTGCCAGGCTTAAATG 1024 Score = 269 bits (298), Expect = 1e-67 Identities = 231/283 (82%), Gaps = 17/283 (6%) Strand=Plus/Plus Query 60152 TTGCTTTCTCTGCCTTTTCACGCAGTGCCTGATAATTAATTTCGCTCACTTCGAACCTCT 60211 |||| | ||||||| |||||||||||||||| | ||||||||||||||||||||||||| Sbjct 609 TTGCCTGCTCTGCCGCTTCACGCAGTGCCTGAGAGTTAATTTCGCTCACTTCGAACCTCT 668 Query 60212 CTGTTTACTGATAAGCTCCAGATCCTCCTGGCAACTTGCACAAGTCCGACAACCCTGAAC 60271 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 669 CTGTTTACTGATAAGTTCCAGATCCTCCTGGCAACTTGCACAAGTCCGACAACCCTGAAC 728 Query 60272 GGCCAGGCGTCTTCGCTCATCTATGGGATCGCCACACTCGCAACAATGAGTAGCAGATGG 60331 | ||||||||||||| |||||||| |||||||||||||| ||||||||||| |||||| Sbjct 729 GACCAGGCGTCTTCGTTCATCTATCGGATCGCCACACTCACAACAATGAGTGGCAGATAT 788 Query 60332 GGCAT-----TACTATCGG---ATTTGTATTTTTGCAGGGAGAGATTGCGCTGCAATTCT 60383 || | | | ||| |||| || |||| | | |||||||| |||||| Sbjct 789 AGCCTGGTGGTTCAGGCGGCGCATTT---TTATTGCTGTG-----TTGCGCTGTAATTCT 840 Query 60384 TCGATTTCAGCGGCGTTGTCGATGATATCTGCCAT-TTTCCTT 60425 || ||||| | || || ||||| |||||||| |||| || Sbjct 841 TCTATTTCTGATGCTGAATCAATGATGTCTGCCATCTTTCATT 883 Score = 176 bits (194), Expect = 2e-39 Identities = 109/117 (93%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 4520 TGCTGCTTCAAGCTCAACACGCAGCTTCCCAACCGTAAGCGCAATCTCCTCGTTCTCCTG 4579 ||||| |||||||||||||||||| ||||| || || |||||||| |||||||||||||| Sbjct 433 TGCTGTTTCAAGCTCAACACGCAGTTTCCCTACTGTTAGCGCAATATCCTCGTTCTCCTG 492 Query 4580 GTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCTGTTCATCCAGCAGTGCCAGCAC 4636 |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 493 GTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCATCCAGCAGTTCCAGCAC 549 Score = 152 bits (168), Expect = 2e-32 Identities = 104/117 (89%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 59844 TGCTGCTCCCAGCTCCACTCTCAGCTTCCCAACCGTAAGCGCAATCTCCTCGTTCTCCTG 59903 ||||| | | ||||| || | ||| ||||| || || |||||||| |||||||||||||| Sbjct 433 TGCTGTTTCAAGCTCAACACGCAGTTTCCCTACTGTTAGCGCAATATCCTCGTTCTCCTG 492 Query 59904 GTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCTGTTCATCCAGCAGTGCCAGCAC 59960 |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 493 GTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCATCCAGCAGTTCCAGCAC 549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 197221868362368