Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900009515.1_202016-02-08] 227 sequences; 9,374,785 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq8 154 2e-32 seq2 93.3 4e-14 seq5 82.4 8e-11 >seq8 Length=329253 Score = 154 bits (170), Expect = 2e-32 Identities = 398/604 (66%), Gaps = 7/604 (1%) Strand=Plus/Plus Query 116600 CGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAAAAGGCC 116659 || || || ||| | ||||| | | |||| || || |||| |||||||| ||||| Sbjct 319284 CGTCGTTTTGTGCTCTTCCCTTTGAAGTACCACGATATCTGGCAAATGTACAAGCAGGCC 319343 Query 116660 GAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGAG 116719 || || || || ||||| | ||||| | |||||| ||||| | |||||| | Sbjct 319344 GAAGCTTCCTTTTGGACTGCTGAGGAAATAGACCTGGGTAAGGATTTGCATGACTGGAAT 319403 Query 116720 ---CGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCC 116776 || ||||||| || || |||||| | || || ||||| || || ||| Sbjct 319404 AATCGTATGAACGATAATGAAAAATTCTTCATCTCGAGAGTCCTTGCCTTCTTTGCTGCC 319463 Query 116777 AGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCC 116836 ||||| || ||||| || || |||| || |||| | ||||| || | || Sbjct 319464 TCTGACGGTATTGTCAATGAAAACTTGGTGGAAAATTTCAGTGCTGAGGTTCAACTTCCC 319523 Query 116837 GAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTAT 116896 || || ||||| ||||| || |||||| ||||||||| | ||||| || | || Sbjct 319524 GAAGCAAAATGCTTTTACGGTTTCCAGATCATGATGGAGAACATTCACTCCGAGACTTAC 319583 Query 116897 TCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTT--TGTTGAACG 116954 || || || || || ||| | | | | ||| || || |||| || | Sbjct 319584 TCCTTGCTGATTGATACTTACATCAAAGATCCAAAAGAGT--CTGAATTCCTGTTCAATG 319641 Query 116955 CCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCG 117014 |||||||||| || || || ||||||| ||||| || ||||| || | ||||| | | Sbjct 319642 CCATCGAGACCATTCCATGTATCAAAGAAAAGGCTGACTGGGCCATGAGATGGATTTCTG 319701 Query 117015 GCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCT 117074 || || |||| || || |||| |||||||| || || ||||| |||||| Sbjct 319702 ATGACGATGCATTGTTCGCTGAACGTTTGGTTGCCTTCGCTGCTGTTGAGGGTATCTTCT 319761 Query 117075 TTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGA 117134 |||| || ||| || | || || ||| | ||||| | || |||||||| || ||| Sbjct 319762 TTTCAGGATCTTTTGCTTCTATCTTCTGGTTGAAGAAGAGAGGTCTCATGCCAGGTTTGA 319821 Query 117135 CTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGC 117194 | ||| ||| ||||| || | ||| |||||||| | || |||||||| || |||| Sbjct 319822 CCTTCTCCAATGAGCTTATTTGCAGAGACGAGGGATTACACACTGACTTTGCTTGCTTGC 319881 Query 117195 TGTT 117198 | || Sbjct 319882 TATT 319885 >seq2 Length=521926 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||||||||| || ||||| || || | || || || || || ||| | || ||||| | Sbjct 435789 AAAAATGCAGATTTTCGTCAAGACCTTAACCGGTAAGACTATTACCTTGGAAGTCGAGTC 435730 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||||| | | | | ||||| || |||| ||||| || || || || | || Sbjct 435729 CTCCGACACCATCGACAATGTCAAGTCCAAGATTCAAGACAAGGAAGGAATTCCTCCTGA 435670 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||| ||||| | || | || || || || ||||| |||| | || || ||||| Sbjct 435669 CCAACAACGTTTGATTTTTGCTGGTAAGCAACTGGAAGACGGTAGAACTCTGTCTGACTA 435610 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||||||| | || |||| || || || | ||||| || || Sbjct 435609 CAACATCCAGAAGGAGTCTACTTTGCACCTGGTTCTGAGATTGAGAGGTGG 435559 >seq5 Length=409289 Score = 82.4 bits (90), Expect = 8e-11 Identities = 144/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 ||||||||||| |||||||| || || || || || || |||||| | || || || | Sbjct 79095 AAAATGCAAATTTTCGTAAAGACCCTTACCGGTAAGACTATCACCTTGGAGGTGGAGTCT 79154 Query 40747 ACCGACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||||| || |||| ||||| || |||| ||||| ||||| || || | || Sbjct 79155 TCCGACACTATTGACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCTCCTGA 79213 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||| || || || |||| || || || || |||| || | | || | ||||| Sbjct 79214 CCAACAGCGTCTGATCTTTGCTGGTAAGCAATTGGAGGATGGTAGAACTTTGTCTGACTA 79273 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||| |||||| | || |||| Sbjct 79274 CAACATCCAAAAGGAGTCTACTTTGCA 79300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515217738065520