Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900009515.1_202016-02-08] 227 sequences; 9,374,785 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq8 194 4e-44 seq2 168 2e-36 seq31 163 7e-35 seq5 156 1e-32 seq50 152 1e-31 seq10 89.7 1e-12 >seq8 Length=329253 Score = 194 bits (214), Expect = 4e-44 Identities = 394/578 (68%), Gaps = 8/578 (1%) Strand=Plus/Plus Query 268730 GATATATGGAGGATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGAT 268789 ||||| ||| |||||||| ||||||| ||||| |||||||||| || ||| |||| Sbjct 319317 GATATCTGGCAAATGTACAAGCAGGCCGAAGCTTCCTTTTGGACTGCTGAGGAAATAGAC 319376 Query 268790 CTGTCTTATGACTTAATAGATTGGAAAAATTTAA--AACCAGAA-GAAAGAAGATTTATA 268846 ||| | | || || || ||||| ||| | ||| | || |||| | || || Sbjct 319377 CTGGGTAAGGATTTGCATGACTGGAATAATCGTATGAACGATAATGAAAAATTCTTCATC 319436 Query 268847 TCTTATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAG 268906 || | ||||| || ||||| | ||| ||||| || || ||||| | || || Sbjct 319437 TCGAGAGTCCTTGCCTTCTTTGCTGCCTCTGACGGTATTGTCAATGAAAACTTGGTGGAA 319496 Query 268907 AAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCT 268966 || ||| || ||||| || |||| ||||| | ||| |||||||| |||||||| Sbjct 319497 AATTTCAGTGCTGAGGTTCAACTTCCCGAAGCAAAATGCTTTTACGGTTTCCAGATCATG 319556 Query 268967 ATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAAC 269026 || || || ||||| || |||| ||| | | || |||||||| || | ||| Sbjct 319557 ATGGAGAACATTCACTCCGAGACTTACTCCTTGCTGATTGATACTTACATCAAAGATCCA 319616 Query 269027 AACGAAAAGAAAAGACTATTTTCTTCTAT-GAGAACTATGGACTGTGTGAGaaaaaaaTC 269085 || || || || || | | || |||| | | | ||| | | | |||| | Sbjct 319617 AAAGAGTCTGAATTCCTGTTCAATGCCATCGAGACCATTCCA-TGTATCAAAGAAAAGGC 319675 Query 269086 TGAATGGGCTCTGAAATGGATAAACGATAGCGC-GCCTTA--CGGAGAAAGGTTAGTTGC 269142 ||| ||||| ||| |||||| ||| || || || || ||| | || ||||| Sbjct 319676 TGACTGGGCCATGAGATGGATTTCTGATGACGATGCATTGTTCGCTGAACGTTTGGTTGC 319735 Query 269143 TTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAA 269202 || || ||||| || ||||| |||||||| || |||||||| ||||||| |||||||| Sbjct 319736 CTTCGCTGCTGTTGAGGGTATCTTCTTTTCAGGATCTTTTGCTTCTATCTTCTGGTTGAA 319795 Query 269203 GAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGG 269262 ||| ||||| || |||||||| || || ||||| || || | || |||| ||||| || Sbjct 319796 GAAGAGAGGTCTCATGCCAGGTTTGACCTTCTCCAATGAGCTTATTTGCAGAGACGAGGG 319855 Query 269263 TTTACACTGCGACTTCGCTTGTTTATTATTTACTAATT 269300 |||||| ||||| ||||| || ||||| || ||| Sbjct 319856 ATTACACACTGACTTTGCTTGCTTGCTATTTTCTCATT 319893 >seq2 Length=521926 Score = 168 bits (186), Expect = 2e-36 Identities = 177/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | || || || || || || ||||| || ||||| || || |||||| Sbjct 435556 ATACCACCTCTCAATCTCAGAACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCA 435615 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||||||||||||||| ||||| || ||||||||||| | | ||||| |||||| Sbjct 435616 GACAGAGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAAATCAAACGTTGTTGGTCAGGA 435675 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||| || || |||||||| | || ||||| || | ||| ||| | || Sbjct 435676 GGAATTCCTTCCTTGTCTTGAATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCG 435735 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || || | |||||||||||||| || | || || || || ||||||||||| Sbjct 435736 ACTTCCAAGGTAATAGTCTTACCGGTTAAGGTCTTGACGAAAATCTGCATTTT 435788 >seq31 Length=97376 Score = 163 bits (180), Expect = 7e-35 Identities = 176/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || |||| || || || | || | || ||||| || || || || || ||| Sbjct 97298 ATACCACCCCTTAATCTTAGAACCAAGTGGAGGGTGGATTCCTTTTGGATGTTGTAATCA 97239 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||||||||||||||| ||||| || ||||||||||||| | || || |||||| Sbjct 97238 GAAAGAGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAAATTAAACGTTGCTGGTCAGGA 97179 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| ||||| |||||||| | ||| ||||| || | || || | || Sbjct 97178 GGAATACCTTCCTTATCTTGAATCTTGGATTTGACATTATCAATAGTGTCTGATGACTCC 97119 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||||| || || ||||||||||| || || ||||| ||||| ||||||||||| Sbjct 97118 ACCTCAAGAGTGATAGTCTTACCTGTTAGGGTTTTAACAAAAATCTGCATTTT 97066 >seq5 Length=409289 Score = 156 bits (172), Expect = 1e-32 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||| | ||||| || | || || ||||| || || || || || |||||||| Sbjct 79324 CCACCTCTCAATCTAAGGACCAAGTGCAAAGTAGACTCCTTTTGGATGTTGTAGTCAGAC 79265 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | ||||||||| || || | ||| || |||||||| || || | |||||| |||||||| Sbjct 79264 AAAGTTCTACCATCCTCCAATTGCTTACCAGCAAAGATCAGACGCTGTTGGTCAGGAGGA 79205 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 ||||| || || ||||||||||| | || || || || | || ||| || || ||| Sbjct 79204 ATTCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTGTCGGAAGACTCCACC 79145 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || | || ||||||||||| ||||| || ||||| || || ||||||||| Sbjct 79144 TCCAAGGTGATAGTCTTACCGGTAAGGGTCTTTACGAAAATTTGCATTTTG 79094 >seq50 Length=24197 Score = 152 bits (168), Expect = 1e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||| || || | ||| | || | || ||||| || |||||||| || ||||| Sbjct 339 CCACCTCTAAGTCTTAATACCAAGTGAAGAGTGGATTCCTTTTGAATATTGTAATCAGAA 280 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 ||||||||||||||||| ||||| || ||||| || || | | || || |||||||| Sbjct 279 AGAGTTCTACCGTCTTCCAGTTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGA 220 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || ||||| || || |||||||| | ||| || || || | ||||| | |||||| Sbjct 219 ATACCTTCCTTGTCTTGAATCTTAGATTTGACGTTATCAATAGTATCTGATGACTCTACC 160 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || |||||||||||||| || || || || || |||||||| Sbjct 159 TCAAGAGTGATAGTCTTACCAGTTAGAGTCTTGACGAAAATCTGCAT 113 >seq10 Length=301389 Score = 89.7 bits (98), Expect = 1e-12 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 165098 GATAAGGATGAATGGAATACTTGGAATAAAATACACGATCCTGTTTTACATATAGAGCTA 165157 ||||||||||||||| |||||||| | | |||||||||||||| |||||||| Sbjct 97346 GATAAGGATGAATGGTTAACTTGGAAGGCCAGAACTGATCCTGTTTTACACATAGAGCTG 97405 Query 165158 AGAAGATGGGCAGATATGATGTTGATAGCACCCTTAACAGCAAACAGTTTAGCGAAGATA 165217 ||||||||||||||||| | || | ||||| || || |||| | || || || || Sbjct 97406 AGAAGATGGGCAGATATTCTAGTGGTTGCACCTTTGACCTCAAATACATTTGCCAAAATC 97465 Query 165218 GCTAACGGTATCTGTAATAACTTGTTAAC 165246 ||| || | ||| | || ||||| || Sbjct 97466 GCTCTAGGGCTGTGTGACAATTTGTTGAC 97494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151395051229716