Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F900009515.1_202016-02-08]
227 sequences; 9,374,785 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq31 131 1e-25
seq50 107 2e-18
seq2 107 2e-18
seq5 105 6e-18
seq25 82.4 6e-11
>seq31
Length=97376
Score = 131 bits (144), Expect = 1e-25
Identities = 162/222 (73%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274
||| ||||| |||||||||||||| |||| ||||| || |||||||||| ||||| |
Sbjct 97065 AAAAATGCAGATTTTTGTTAAAACCCTAACAGGTAAGACTATCACTCTTGAGGTGGAGTC 97124
Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334
| || || | || || ||||| || |||||||| ||||| |||||||| || ||
Sbjct 97125 ATCAGACACTATTGATAATGTCAAATCCAAGATTCAAGATAAGGAAGGTATTCCTCCTGA 97184
Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394
|| |||||| | || ||||| || || || | || || | || | || |||||
Sbjct 97185 CCAGCAACGTTTAATTTTTGCTGGTAAGCAACTGGAAGACGGTAGAACTCTTTCTGATTA 97244
Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATT 22436
|||||| ||||| ||||||||| | || || ||| | ||||
Sbjct 97245 CAACATCCAAAAGGAATCCACCCTCCACTTGGTTCTAAGATT 97286
>seq50
Length=24197
Score = 107 bits (118), Expect = 2e-18
Identities = 142/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| ||||| || || ||| |||| ||||| || |||||||||| || || | |
Sbjct 113 ATGCAGATTTTCGTCAAGACTCTAACTGGTAAGACTATCACTCTTGAGGTAGAGTCATCA 172
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | || | ||||| || |||||||||||||| |||||||| || || ||
Sbjct 173 GATACTATTGATAACGTCAAATCTAAGATTCAAGACAAGGAAGGTATTCCTCCTGACCAG 232
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|||||| | || || || || || || | || || | || | || ||||||||
Sbjct 233 CAACGTTTGATCTTCGCTGGTAAGCAACTGGAAGACGGTAGAACTCTTTCTGATTACAAT 292
Query 22399 ATTCAAAAAGAATCCAC 22415
|||||||| ||||||||
Sbjct 293 ATTCAAAAGGAATCCAC 309
>seq2
Length=521926
Score = 107 bits (118), Expect = 2e-18
Identities = 163/232 (70%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274
||| ||||| ||||| || || || ||||||||||| || | || | ||||| || |
Sbjct 435789 AAAAATGCAGATTTTCGTCAAGACCTTAACCGGTAAGACTATTACCTTGGAAGTCGAGTC 435730
Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334
| |||| ||| | ||| || |||| || |||||||||||||| || ||||| || ||
Sbjct 435729 CTCCGACACCATCGACAATGTCAAGTCCAAGATTCAAGACAAGGAAGGAATTCCTCCTGA 435670
Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394
||||||||| | || ||||| || || || | || || | || | || || ||
Sbjct 435669 CCAACAACGTTTGATTTTTGCTGGTAAGCAACTGGAAGACGGTAGAACTCTGTCTGACTA 435610
Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
|||||| || || || || || | || | ||| || ||||| | || |||
Sbjct 435609 CAACATCCAGAAGGAGTCTACTTTGCACCTGGTTCTGAGATTGAGAGGTGGT 435558
>seq5
Length=409289
Score = 105 bits (116), Expect = 6e-18
Identities = 162/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275
|| ||||||||||| || || || | |||||||| || |||| | || ||||| |
Sbjct 79095 AAAATGCAAATTTTCGTAAAGACCCTTACCGGTAAGACTATCACCTTGGAGGTGGAGTCT 79154
Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335
|||| || | ||| | |||| || ||||| ||||||||||| ||||| || ||
Sbjct 79155 TCCGACACTATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCTCCTGAC 79214
Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395
||||| ||||| || ||||| || || || || |||||| | || | || || |||
Sbjct 79215 CAACAGCGTCTGATCTTTGCTGGTAAGCAATTGGAGGATGGTAGAACTTTGTCTGACTAC 79274
Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
||||| ||||| || || || | || || || | ||||| | || |||
Sbjct 79275 AACATCCAAAAGGAGTCTACTTTGCACTTGGTCCTTAGATTGAGAGGTGGT 79325
>seq25
Length=126822
Score = 82.4 bits (90), Expect = 6e-11
Identities = 120/170 (71%), Gaps = 0/170 (0%)
Strand=Plus/Plus
Query 129697 ATCGAGGCCAAATTGCAGACGGCACTTTCGTTTTTGTCACTGTACTCGACAATTTCGGCG 129756
|| ||||||||||| || || || ||| || | | |||||| |||||||| |
Sbjct 59992 ATGGAGGCCAAATTACACACTGCGATTTGGTCCCTTGAAGAGTACTCCACAATTTCACAG 60051
Query 129757 CACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGATTACTTTTCATGTTGCAAGCA 129816
||||||||| | || || || ||||| | |||| ||| |||| |||||||||
Sbjct 60052 CACAAATTAGAACATTGTATTGTACCCAAGTTGCTTTGGTTAGATTTCCTGTTGCAAGAG 60111
Query 129817 TCTTTGTACATCATGTACGGCGTGCCCGTTTCGACTTGCGTTTCGACAAT 129866
||||| |||| |||| |||| || || || || | ||| | || |||||
Sbjct 60112 TCTTTATACAACATGAACGGAGTCCCTGTCTCAATTTGAGCGTCTACAAT 60161
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419726838796255
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |