Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F900009515.1_202016-02-08]
227 sequences; 9,374,785 total letters
Query= NC_011357.1
Length=62147
Score E
Sequences producing significant alignments: (Bits) Value
seq95 646 0.0
seq61 141 4e-29
>seq95
Length=1024
Score = 646 bits (716), Expect = 0.0
Identities = 393/416 (94%), Gaps = 0/416 (0%)
Strand=Plus/Plus
Query 4960 TTGCTTTTTCTGCCTTTTCACGCAGTGCCTGATAATTAATTTCGCTCACTTCGAACCTCT 5019
|||| | |||||| |||||||||||||||| | |||||||||||||||||||||||||
Sbjct 609 TTGCCTGCTCTGCCGCTTCACGCAGTGCCTGAGAGTTAATTTCGCTCACTTCGAACCTCT 668
Query 5020 CTGTTTACTGATAAGCTCCAGATCCTCCTGGCAACTTGCACAAGTCCGACAACCCTGAAC 5079
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 669 CTGTTTACTGATAAGTTCCAGATCCTCCTGGCAACTTGCACAAGTCCGACAACCCTGAAC 728
Query 5080 TGCCAGGCGTCTTCGTTCATCTATCGGATCGCCACACTCACAACAATGAGTTGCGGATAC 5139
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 729 GACCAGGCGTCTTCGTTCATCTATCGGATCGCCACACTCACAACAATGAGTGGCAGATAT 788
Query 5140 AGTCTGGTAGTTCAGGCGACGCATTTTTATTGCTGTATTGCGCTGTAATTCTTCAATTTC 5199
|| ||||| ||||||||| ||||||||||||||||| ||||||||||||||||| |||||
Sbjct 789 AGCCTGGTGGTTCAGGCGGCGCATTTTTATTGCTGTGTTGCGCTGTAATTCTTCTATTTC 848
Query 5200 TGATGCTGAATCAATGATGTCTGCCATCTTTCATTAATCCCTGAATTGTTGGTTAATACG 5259
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 849 TGATGCTGAATCAATGATGTCTGCCATCTTTCATTAATCCCTGAACTGTTGGTTAATACG 908
Query 5260 CTTGAGGGTGAATGCGAACAATAAAAAAGGAGCCTGTAGCTCCCTGATGATTTTGCTTTT 5319
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 909 CTTGAGGGTGAATGCGAATAATAAAAAAGGAGCCTGTAGCTCCCTGATGATTTTGCTTTT 968
Query 5320 CATGTTCATCGCTCCTTAAAGACGCCGTTTAACATGCCGATCGCCAGACTTAAATG 5375
||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 969 CATGTTCATCGTTCCTTAAAGACGCCGTTTAACATGCCGATTGCCAGGCTTAAATG 1024
Score = 277 bits (306), Expect = 7e-70
Identities = 179/196 (91%), Gaps = 0/196 (0%)
Strand=Plus/Plus
Query 4573 TTTCCAGTTCTGCTATGCGCTTACTTCCATCCGCGATTACTCCCTCGTAATATTCACGCT 4632
||||||||| || || |||||||| ||||||| ||| || || |||||||| |||||||
Sbjct 354 TTTCCAGTTTAGCAATACGCTTACTCCCATCCGAGATAACACCTTCGTAATACTCACGCT 413
Query 4633 GCTCGTTGAGTTTTGATTTTGCTGCTTCAAGCTCAACACGCAGCTTCCCAACCGTAAGCG 4692
|||||||||||||||||||||||| |||||||||||||||||| ||||| || || ||||
Sbjct 414 GCTCGTTGAGTTTTGATTTTGCTGTTTCAAGCTCAACACGCAGTTTCCCTACTGTTAGCG 473
Query 4693 CAATCCCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCAT 4752
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 CAATATCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCAT 533
Query 4753 CCAGCAGTTCCAGCAC 4768
||||||||||||||||
Sbjct 534 CCAGCAGTTCCAGCAC 549
>seq61
Length=5831
Score = 141 bits (156), Expect = 4e-29
Identities = 365/548 (67%), Gaps = 15/548 (3%)
Strand=Plus/Minus
Query 16528 ACCGGGCGGTTGTGGGCGTATGTTCGTGATGACCGCAATGCAGGGTCAGCGTTGGCACCT 16587
|||| ||| |||| || || ||||||||||| |||| || || | | || | ||
Sbjct 2978 ACCGTCCGGCAGTGGTGCTACGTCCGTGATGACCGTGATGCCGGCTCGGAGATGCCCCCG 2919
Query 16588 GCAGTGTGGTTCGCTTACAGCCCGGACAGAAAAGGCATCCATCCGCAGACTCATCTTGCC 16647
|| || |||||||| ||||| || | | | ||||| |||||| | || | ||| || |||
Sbjct 2918 GCGGTCTGGTTCGCGTACAGTCCTG-CTGGAAAGGTATCCATTCACAAAATCACCTGGCC 2860
Query 16648 TGCTTCAGCGGTGTGCTGCAAGCGGATGCGTACGCCGGGTTCAACGAGCTGTATCGCAAT 16707
| | |||||||||| | ||||| ||||| |||| || | | || || ||| |||
Sbjct 2859 GGTTACAGCGGTGTGTTTCAAGCCGATGCTTACGGTGGCTAC--CGGGCGTTATACGAAT 2802
Query 16708 --GGTGGGATAACGGAAGCTGCCTGCTGGGCTCATGCCCGCCGAAAGATCCACGATG--- 16762
|| | ||||||||||| || || ||| |||||||| |||| ||||||||||
Sbjct 2801 CAGGCAGAATAACGGAAGCCGCGTGTATGGCCCATGCCCGGAGAAAAATCCACGATGTGC 2742
Query 16763 -TGCACGTCCGCATCCCGTCAGCACTGACGGAAGAAGCCCTGGAGCAGATCGGTCAGTTG 16821
|||| | ||| ||| | ||| ||| ||||||||| ||| ||| || | ||
Sbjct 2741 ATGCAAGAGCGCCAACCGACGTCAC-CACG---GAAGCCCTGCAGCGTATCAGTGAACTG 2686
Query 16822 TACGCCATAGAGGCGGATATAAGGGGAATGCCGGCAGAGCAGCGGCTTGCTGAACGTCAG 16881
|| ||||| |||| | | |||| | ||||| ||||| || || | | | |
Sbjct 2685 TATGCCATCGAGGTTGCGGTCCGGGGCTGTTCAGCAGAACAGCGTCTGGCGGCAAGAAAA 2626
Query 16882 CGAAAAACGAAACCGTTGTTGAAATCCCTGGAAAGCTGGTTGCGTGAAAAGATGAAGACC 16941
| | | || || || | || ||| | |||| | | ||||||| ||
Sbjct 2625 GCCAGACCTGCGCCACTGATGCAGTCACTGTACGACTGGATACAGACTCAGATGAAAACA 2566
Query 16942 CTGTCGCGACACTCAGAGTTGGCGAAGGCGTTCGCGTACGCACTTAACCAGTGGCCGGCA 17001
||| |||| ||||| || ||| || ||||| || ||| || | || || ||
Sbjct 2565 CTGGCGCGTCACTCGGATACGGCAAAAGCGTTTGCATACCTGCTGCAGTAGCGGGATGCT 2506
Query 17002 CTG-ACGTACTATGCGAACGATGGCTGGGTGGAAATCGACAACAACATCGCTGAAAATGC 17060
| | |||| ||| | |||| |||||||||||||||||||||||||| || || ||
Sbjct 2505 CGGAACGTGTACTGC-AGTAATGGTTGGGTGGAAATCGACAACAACATCGCAGAGAACGC 2447
Query 17061 CCTGCGGG 17068
| | ||||
Sbjct 2446 CTTACGGG 2439
Score = 131 bits (144), Expect = 7e-26
Identities = 92/105 (88%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 58671 GAGCATATCCAGGACTGGCCGGCAAACCGGGTACGCGATCTGTTGCCATGGAAAGTTGAT 58730
|| ||||||||||||||| ||||||||| |||||||||||||| || || |||||||||
Sbjct 965 GAACATATCCAGGACTGGTCGGCAAACCTGGTACGCGATCTGTAACCCTGAAAAGTTGAT 906
Query 58731 CTGAGCGCTCAGTAAATATCAATACGGTTCTGGCGAGCCGCTTAC 58775
||| |||||||||||||||||||| |||||| |||||| ||||
Sbjct 905 CTGGCCGCTCAGTAAATATCAATACTGTTCTGTTGAGCCGTTTAC 861
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 198745050157876
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |