Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900009515.1_202016-02-08] 227 sequences; 9,374,785 total letters Query= NC_011357.1 Length=62147 Score E Sequences producing significant alignments: (Bits) Value seq95 646 0.0 seq61 141 4e-29 >seq95 Length=1024 Score = 646 bits (716), Expect = 0.0 Identities = 393/416 (94%), Gaps = 0/416 (0%) Strand=Plus/Plus Query 4960 TTGCTTTTTCTGCCTTTTCACGCAGTGCCTGATAATTAATTTCGCTCACTTCGAACCTCT 5019 |||| | |||||| |||||||||||||||| | ||||||||||||||||||||||||| Sbjct 609 TTGCCTGCTCTGCCGCTTCACGCAGTGCCTGAGAGTTAATTTCGCTCACTTCGAACCTCT 668 Query 5020 CTGTTTACTGATAAGCTCCAGATCCTCCTGGCAACTTGCACAAGTCCGACAACCCTGAAC 5079 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 669 CTGTTTACTGATAAGTTCCAGATCCTCCTGGCAACTTGCACAAGTCCGACAACCCTGAAC 728 Query 5080 TGCCAGGCGTCTTCGTTCATCTATCGGATCGCCACACTCACAACAATGAGTTGCGGATAC 5139 ||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 729 GACCAGGCGTCTTCGTTCATCTATCGGATCGCCACACTCACAACAATGAGTGGCAGATAT 788 Query 5140 AGTCTGGTAGTTCAGGCGACGCATTTTTATTGCTGTATTGCGCTGTAATTCTTCAATTTC 5199 || ||||| ||||||||| ||||||||||||||||| ||||||||||||||||| ||||| Sbjct 789 AGCCTGGTGGTTCAGGCGGCGCATTTTTATTGCTGTGTTGCGCTGTAATTCTTCTATTTC 848 Query 5200 TGATGCTGAATCAATGATGTCTGCCATCTTTCATTAATCCCTGAATTGTTGGTTAATACG 5259 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 849 TGATGCTGAATCAATGATGTCTGCCATCTTTCATTAATCCCTGAACTGTTGGTTAATACG 908 Query 5260 CTTGAGGGTGAATGCGAACAATAAAAAAGGAGCCTGTAGCTCCCTGATGATTTTGCTTTT 5319 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 909 CTTGAGGGTGAATGCGAATAATAAAAAAGGAGCCTGTAGCTCCCTGATGATTTTGCTTTT 968 Query 5320 CATGTTCATCGCTCCTTAAAGACGCCGTTTAACATGCCGATCGCCAGACTTAAATG 5375 ||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 969 CATGTTCATCGTTCCTTAAAGACGCCGTTTAACATGCCGATTGCCAGGCTTAAATG 1024 Score = 277 bits (306), Expect = 7e-70 Identities = 179/196 (91%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 4573 TTTCCAGTTCTGCTATGCGCTTACTTCCATCCGCGATTACTCCCTCGTAATATTCACGCT 4632 ||||||||| || || |||||||| ||||||| ||| || || |||||||| ||||||| Sbjct 354 TTTCCAGTTTAGCAATACGCTTACTCCCATCCGAGATAACACCTTCGTAATACTCACGCT 413 Query 4633 GCTCGTTGAGTTTTGATTTTGCTGCTTCAAGCTCAACACGCAGCTTCCCAACCGTAAGCG 4692 |||||||||||||||||||||||| |||||||||||||||||| ||||| || || |||| Sbjct 414 GCTCGTTGAGTTTTGATTTTGCTGTTTCAAGCTCAACACGCAGTTTCCCTACTGTTAGCG 473 Query 4693 CAATCCCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCAT 4752 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 474 CAATATCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCAT 533 Query 4753 CCAGCAGTTCCAGCAC 4768 |||||||||||||||| Sbjct 534 CCAGCAGTTCCAGCAC 549 >seq61 Length=5831 Score = 141 bits (156), Expect = 4e-29 Identities = 365/548 (67%), Gaps = 15/548 (3%) Strand=Plus/Minus Query 16528 ACCGGGCGGTTGTGGGCGTATGTTCGTGATGACCGCAATGCAGGGTCAGCGTTGGCACCT 16587 |||| ||| |||| || || ||||||||||| |||| || || | | || | || Sbjct 2978 ACCGTCCGGCAGTGGTGCTACGTCCGTGATGACCGTGATGCCGGCTCGGAGATGCCCCCG 2919 Query 16588 GCAGTGTGGTTCGCTTACAGCCCGGACAGAAAAGGCATCCATCCGCAGACTCATCTTGCC 16647 || || |||||||| ||||| || | | | ||||| |||||| | || | ||| || ||| Sbjct 2918 GCGGTCTGGTTCGCGTACAGTCCTG-CTGGAAAGGTATCCATTCACAAAATCACCTGGCC 2860 Query 16648 TGCTTCAGCGGTGTGCTGCAAGCGGATGCGTACGCCGGGTTCAACGAGCTGTATCGCAAT 16707 | | |||||||||| | ||||| ||||| |||| || | | || || ||| ||| Sbjct 2859 GGTTACAGCGGTGTGTTTCAAGCCGATGCTTACGGTGGCTAC--CGGGCGTTATACGAAT 2802 Query 16708 --GGTGGGATAACGGAAGCTGCCTGCTGGGCTCATGCCCGCCGAAAGATCCACGATG--- 16762 || | ||||||||||| || || ||| |||||||| |||| |||||||||| Sbjct 2801 CAGGCAGAATAACGGAAGCCGCGTGTATGGCCCATGCCCGGAGAAAAATCCACGATGTGC 2742 Query 16763 -TGCACGTCCGCATCCCGTCAGCACTGACGGAAGAAGCCCTGGAGCAGATCGGTCAGTTG 16821 |||| | ||| ||| | ||| ||| ||||||||| ||| ||| || | || Sbjct 2741 ATGCAAGAGCGCCAACCGACGTCAC-CACG---GAAGCCCTGCAGCGTATCAGTGAACTG 2686 Query 16822 TACGCCATAGAGGCGGATATAAGGGGAATGCCGGCAGAGCAGCGGCTTGCTGAACGTCAG 16881 || ||||| |||| | | |||| | ||||| ||||| || || | | | | Sbjct 2685 TATGCCATCGAGGTTGCGGTCCGGGGCTGTTCAGCAGAACAGCGTCTGGCGGCAAGAAAA 2626 Query 16882 CGAAAAACGAAACCGTTGTTGAAATCCCTGGAAAGCTGGTTGCGTGAAAAGATGAAGACC 16941 | | | || || || | || ||| | |||| | | ||||||| || Sbjct 2625 GCCAGACCTGCGCCACTGATGCAGTCACTGTACGACTGGATACAGACTCAGATGAAAACA 2566 Query 16942 CTGTCGCGACACTCAGAGTTGGCGAAGGCGTTCGCGTACGCACTTAACCAGTGGCCGGCA 17001 ||| |||| ||||| || ||| || ||||| || ||| || | || || || Sbjct 2565 CTGGCGCGTCACTCGGATACGGCAAAAGCGTTTGCATACCTGCTGCAGTAGCGGGATGCT 2506 Query 17002 CTG-ACGTACTATGCGAACGATGGCTGGGTGGAAATCGACAACAACATCGCTGAAAATGC 17060 | | |||| ||| | |||| |||||||||||||||||||||||||| || || || Sbjct 2505 CGGAACGTGTACTGC-AGTAATGGTTGGGTGGAAATCGACAACAACATCGCAGAGAACGC 2447 Query 17061 CCTGCGGG 17068 | | |||| Sbjct 2446 CTTACGGG 2439 Score = 131 bits (144), Expect = 7e-26 Identities = 92/105 (88%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 58671 GAGCATATCCAGGACTGGCCGGCAAACCGGGTACGCGATCTGTTGCCATGGAAAGTTGAT 58730 || ||||||||||||||| ||||||||| |||||||||||||| || || ||||||||| Sbjct 965 GAACATATCCAGGACTGGTCGGCAAACCTGGTACGCGATCTGTAACCCTGAAAAGTTGAT 906 Query 58731 CTGAGCGCTCAGTAAATATCAATACGGTTCTGGCGAGCCGCTTAC 58775 ||| |||||||||||||||||||| |||||| |||||| |||| Sbjct 905 CTGGCCGCTCAGTAAATATCAATACTGTTCTGTTGAGCCGTTTAC 861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 198745050157876