Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F900009515.1_202016-02-08]
227 sequences; 9,374,785 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq2 100 2e-16
seq5 95.1 8e-15
seq50 89.7 3e-13
seq31 82.4 5e-11
>seq2
Length=521926
Score = 100 bits (110), Expect = 2e-16
Identities = 162/231 (70%), Gaps = 8/231 (3%)
Strand=Plus/Plus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810
|| || ||||| ||||| |||||||| | || ||||||||| ||||| ||||| ||
Sbjct 435559 CCACCTCTCAATCTCAGAACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCAGAC 435618
Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870
|| | | | || ||||||||||| || || || |||| ||||| ||||| | ||
Sbjct 435619 AGAGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAAATCAAACGTTGTTGGTCAGGAGGA 435678
Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTC 34926
| || |||||||| | || || ||||| || | ||||| || || |||
Sbjct 435679 ATTCCTTCCTTGTCTTGAATCTTGGACTTGAC--AT--TGTCGATGGTGTCGGAGGACTC 435734
Query 34927 GACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||| || | ||| || ||||| || || | |||||| || || ||||||||
Sbjct 435735 GACTTCCAAGGTAATAGTCTTACCGGTTAAGGTCTTGACGAAAATCTGCAT 435785
>seq5
Length=409289
Score = 95.1 bits (104), Expect = 8e-15
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810
|| || ||||| || ||||||| ||| | || |||||| || ||||| ||||| ||
Sbjct 79324 CCACCTCTCAATCTAAGGACCAAGTGCAAAGTAGACTCCTTTTGGATGTTGTAGTCAGAC 79265
Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870
| | | |||| |||| |||||| || || |||||||| || || ||||| | ||
Sbjct 79264 AAAGTTCTACCATCCTCCAATTGCTTACCAGCAAAGATCAGACGCTGTTGGTCAGGAGGA 79205
Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930
| ||||||||||| | || || |||||| | || | || | ||| ||
Sbjct 79204 ATTCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTGTCGGAAGACTCCACC 79145
Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| | ||| || ||||| || || ||||||||||| || || |||||
Sbjct 79144 TCCAAGGTGATAGTCTTACCGGTAAGGGTCTTTACGAAAATTTGCAT 79098
>seq50
Length=24197
Score = 89.7 bits (98), Expect = 3e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828
|||| ||||| ||| ||||| ||||| || || || || || | | | || |||
Sbjct 321 ACCAAGTGAAGAGTGGATTCCTTTTGAATATTGTAATCAGAAAGAGTTCTACCGTCTTCC 262
Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888
|||||||| || |||||||||| ||||||||||| | || | || |||||||| |
Sbjct 261 AGTTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGAATACCTTCCTTGTCTTGA 202
Query 34889 ATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTT 34948
|| || ||||||| | || | || | ||| || |||| || || |||||
Sbjct 201 ATCTTAGATTTGACGTTATCAATAGTATCTGATGACTCTACCTCAAGAGTGATAGTCTTA 142
Query 34949 CCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| || || ||||| || || ||||||||
Sbjct 141 CCAGTTAGAGTCTTGACGAAAATCTGCAT 113
>seq31
Length=97376
Score = 82.4 bits (90), Expect = 5e-11
Identities = 158/231 (68%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810
|| ||||| || || || |||| ||| | |||| ||||| || ||||| || || ||
Sbjct 97295 CCACCCCTTAATCTTAGAACCAAGTGGAGGGTGGATTCCTTTTGGATGTTGTAATCAGAA 97236
Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870
|| | | | || ||||||||||| || || || || | ||||||||||| | ||
Sbjct 97235 AGAGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAAATTAAACGTTGCTGGTCAGGAGGA 97176
Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTC 34926
| || ||||| || | || || |||||| || |||| || || | |||
Sbjct 97175 ATACCTTCCTTATCTTGAATCTTGGATTTGAC--AT--TATCAATAGTGTCTGATGACTC 97120
Query 34927 GACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| |||| || || ||||| || || ||||| || ||||| ||||||||
Sbjct 97119 CACCTCAAGAGTGATAGTCTTACCTGTTAGGGTTTTAACAAAAATCTGCAT 97069
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325691898950513
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |